Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0275 ATGGAAGAAGAAAGAAGCGTGGCAAACAAGAAAATGGCAAAGAACGAGGTGGTTCTACGAATTTCAGACTCTGAAGGAGCCATGAATGCAGAAATAAAAGGTTCTGGAAGTTTTCCAGTAGCTGAAAGCAGCTCCCTTTCTCCTCAGCACAAGACCCAGCTAAGTAAAAGGTTTAGAGATTCTGGTGGTGAAATCACAGAGCCACTGAGAAACAAGGATCAAGTTTCCACAAAGTGGATGACAACTACAAAGAGGTTGATCGGTCAGTCGGAATTTTCGAAGCCAAAGTCCAGAATGGTGGATCCACCGTGTCCAAGATTTGCAAAATTTGTCGAAGAAAAGGTTCGAATGACAAGTTCATTTGCATGGAATTCTCGTAACAGGAATGTTCCCGAAGCAACTACAGACAATCCAAGAACCCCCTTGCTTGGGACTCCCGCTGAAGAAGATGATGACGATGAAGAGGTGTACATGATTGCAAATTTTGACGTGGCCAAGAGATCTGGTAGGAAGTGGAGAGTTTTTGAGTTGTTTGCTTTTGCTTTCATCATGGGGTTTTTTATTGCAAGTTTGTCTGTTACTCCGTTGCAAAAAAGAGAGCTTTGGGGTTTGAAGATGTGGAAATGGTGTGTATTTATATTGGCTATCCTCTGTGGTAGACTGGTTACTGAGTGGTTTATCAATGTTTTGGTTTTCTTGATTGAGAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTCTATGGTGTGAAGAAGAGTGTTCAGGGCTTTATATGGTTAAGTTTGGTTCTTCTGACATGGGATATGCTTTTCAGCCCAGAAGTGGAGAGAACCAGTAAGGTTGGTAGGATTCTTAATTACATTGCTCTGACCCTTGCTTCTTGTCTTATTGGAGCAGCTTTGTGGTTAGCCAAAACATTGTTGATAAAGCTTCTAGCTTCAAGTTTTCAATCTACAAGATTCTTTGACAGGGTGCACGAATCAATCTTTCATCAATACATTCTCAAGACTCTTTCAGGTCCTCCCTTGATGGAGATGGCTGAAAAGGTTGGGACAACTTCAAATAGCGACCAACTTAGTTATAAGACCATGGTTAATAAGAAGGAAGGGGAGAGAGGACAAGTAATTGATGCAGACAAGCTCAAGAAAATGACACAAAAGAAAGTTTCTCCTTTGACTATGAAAGGGTTGATTAATGTGATTAGGAGTTCTGGGTTGTCTACAATCTCCTATGCACAGGATGATGAAGAGAATGAACAGAAAGATAATGAAATTAATAGCGGGTGGGAAGCAAAGGCAGCTGCTTATAGAATTTTTATGAACGTAGCCAAGCCAGGACACAAGTATATTGAGATAGATGACCTCTTGCGATTCATGAAAATTGAAGAAGTGGAAAACTTGCTTCCACTATTTGAAGGTGCAGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGGTGAAAGTCTACCTTGGACGCAAATCGCTCATACATTCACTAAATGATACCAACACAGCTGTTGATGACTTGAATATACTTGCTTCTGCAGTTGTGGTTATTGTGACCCTTATTGTGTGGCTTCTTTTAATGGGTGTCTTAACAACTGAAGTTCTTGTCTTTATATCATCCCAGCTTTTACTTGTGGGTTTCATGTTTGGCAACACTGCCAAGACTGTGTTTGAAGCTATTATATTTGTTTTTGTGGTGCACCCTTTTGATGTTGGTGATCGATGCGTCATTGATGGTGTTCAGATGGTTGTGGAAGAGATGAACATACTAACTACCGTCTTTCTGAGATATGACAATGAAAAGATTTTCTATCCAAATTCAGTTCTCTCAAACAAGCCAATCAGTAACTTCAACAGGAGTCCAGAAATGATTGATGCTATTGAATTTGTTGTTGATGTTTCTACTTCTATTGAAAGTATTGGAGCTTTAAAGGCAAAGTTAAAAGTATATTTGGAGAGTAGGCCTCAACACTGGAATACCCAATACGATGTATTGGTTAATGGTATTGAGAATGTGAATAAGATGAAAATGGCTGTGTTTGTTACTCACACCATAAATTTTCAGAACTATGGAGATAAGAGCAGCCGAAGATCGGAACTAGTCCTGGAGTTAAAGAAAATTCTTGAAGATCTTAATATTAAATATCATCTGCTGCCACAAGAAGTTCATGTCAGCTGTGTAAGGTCACCAGACTCAACATTGCAAGCAGTTTGA 2235 0.3951 MEEERSVANKKMAKNEVVLRISDSEGAMNAEIKGSGSFPVAESSSLSPQHKTQLSKRFRDSGGEITEPLRNKDQVSTKWMTTTKRLIGQSEFSKPKSRMVDPPCPRFAKFVEEKVRMTSSFAWNSRNRNVPEATTDNPRTPLLGTPAEEDDDDEEVYMIANFDVAKRSGRKWRVFELFAFAFIMGFFIASLSVTPLQKRELWGLKMWKWCVFILAILCGRLVTEWFINVLVFLIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWDMLFSPEVERTSKVGRILNYIALTLASCLIGAALWLAKTLLIKLLASSFQSTRFFDRVHESIFHQYILKTLSGPPLMEMAEKVGTTSNSDQLSYKTMVNKKEGERGQVIDADKLKKMTQKKVSPLTMKGLINVIRSSGLSTISYAQDDEENEQKDNEINSGWEAKAAAYRIFMNVAKPGHKYIEIDDLLRFMKIEEVENLLPLFEGAVETRRIKRKSLKNWLVKVYLGRKSLIHSLNDTNTAVDDLNILASAVVVIVTLIVWLLLMGVLTTEVLVFISSQLLLVGFMFGNTAKTVFEAIIFVFVVHPFDVGDRCVIDGVQMVVEEMNILTTVFLRYDNEKIFYPNSVLSNKPISNFNRSPEMIDAIEFVVDVSTSIESIGALKAKLKVYLESRPQHWNTQYDVLVNGIENVNKMKMAVFVTHTINFQNYGDKSSRRSELVLELKKILEDLNIKYHLLPQEVHVSCVRSPDSTLQAV* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0275 744 Gene3D - 575 624 IPR023408 -
Vra5g0275 744 SUPERFAMILY Sm-like ribonucleoproteins 565 624 IPR010920 -
Vra5g0275 744 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 10 735 - -
Vra5g0275 744 MobiDBLite consensus disorder prediction 53 67 - -
Vra5g0275 744 PIRSF Memb_At2g17000 2 743 IPR016688 -
Vra5g0275 744 MobiDBLite consensus disorder prediction 28 67 - -
Vra5g0275 744 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 10 735 IPR016688 -
Vra5g0275 744 MobiDBLite consensus disorder prediction 38 52 - -
Vra5g0275 744 Pfam Mechanosensitive ion channel 519 721 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0275 Vra-Chr5 2556263 2559712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0275 1 732 Mechanosensitive Ion Channel Family AT5G12080 45.515 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0275 K22048 - gmx:100777332 1065.83