Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0274 ATGGAAGAAGAAGGAGACGTGTCAGACAAGAAAAAGACAAAGAACGAGGTGGTTCTACGAATTTCAGACACTGAAGAAGCCATTACTACAAAGGAGCAAAGGGTTTCCAGAAGCTTCCCAGTAGCTGAAAACAGTTCCCTTTCTCCTCAGCATAATACCCAGATAGGTAAAGGGTTCAGAGATTCTCATGGTGAAATCACAGAGTGCAATGGTCAAGTATCCCCAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGGTCGGAGTTTTCAAAACCAAAGTCCAGAATGGTGGAACCAACGTGTCCAAAAGATGCAAACTTTGTCGAAGAAAAGGCTCAAAAGACAAGTTCACCTGCAAGGAATTCTCCTAACAAGAATGTTCCTGACGCAACTGTTGTCACCCCAAGAAGCCCCTTCCTTAGGACACCAAGGGAAGAAGATGATGATGACGAGGAAGTGTACAAGGCTGCAAATGTTGAAGTGAGCAAGAGATCTGGTAAGAAGTGGAGAGTTGTAGAGTTGTTTGCTTTTGCTTGCATCGTGGGGTTTTTTATTGCATGCTTGACTGTGAATGAATTGCAAAAAAGGTTGATTTGGGGATTGGAACTGTGGAAATGGTGTGTATTGGTTTTGGTTGTCCTCTGTGGTAGACTGGTCACTGAGTGGTTTATCAATGTTTTGGTTTTCTTGATTGAGAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTCTACGGTGTGAAGAAGAGTGTTCAGGGCTTTATATGGCTGAGTTTGGTTCTTCTGACATGGGGACTGCTTTTCAACCATGGAGTGGAGAGAACCAGAAAGGTTACTAAGATTCTTAATTACATTACTAGGGCCCTTGCTTCTTGTCTTCTTGGAGCAGCTATATGGTTGGTCAAAACATTGTTGATAAAACTTTTAGCTTCAAAATTTCAATCTACTAGATTTTTTGACAGGGTGCAAGAATCAATCTTTCATCAATACATTCTCAAGACTCTTTCAGGTCCTCCCTTGAGGGAGGTGGCTGAAAATGTAGGTTGGACTTCAAATAGTGGGCAACTCAGTTTTAAGAGCATGAATAATGAGAATCAGGGGGAGAAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACCAGAGAAAGTTTCTGCTTGGACTATGAAAGGTCTGATTAATGTGATAAAGAGTTCTGGGTTGTCTACCATCTCCTATGCGCCAGATGAAGATGAGAATGACCAGAAAGATAATGAAATTAATAGCGAGTGGGAAGCAAAGGCAGCTGCATACAGAATTTTCGGGAACGTAGCCAAGCCAGGACACAATTATATTGATAAGGATGACCTCTTGCGATTCATGAAAAATGAAGAAGTGGAAAACGTGCTTCCACTATTTGAAGGTGCAGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGCTTTTACTTGTGGTTTTCATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCCATTATATTTGTTTTTGTGATGCACCCTTTTGATGTTGGTGATCGTTGTGTTATTGATGGAGTTCAGATGATCGTGGAAGAGATGAACATACTAACTACCGTCTTTCTGAGATATGACAATGAAAAGATTTTCTATCCAAATTCAGTTCTGGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCTGTTGAATTTGCTGTTGATGTTTCTACTTCTGTTGAAAGTATTGGAGCTTTGAAGGCAAAGTTAAAAGTATATTTGGAGAGTAGACCTCAACATTGGCGTCCCAACCACAATGTAGTGGTTAAGGATATTGAGAATGTGAATAAGTTGAAAATGGCTCTATATGTTACTCACACCATAAATTTTCAAAACTATGGGGAGAAGAGCAACCGAAGATCCGAATTAGTCCTAGAGTTAAAGAAAATTTTTGAAGATCTTAATATTAAATATCATCTGCTCCCACAAGAAGTTCATCTCAGTTATGTAAGGTCACAAGACTCAACAGCACAGACATTTTGA 2055 0.399 MEEEGDVSDKKKTKNEVVLRISDTEEAITTKEQRVSRSFPVAENSSLSPQHNTQIGKGFRDSHGEITECNGQVSPELVTTTKRLMGRSEFSKPKSRMVEPTCPKDANFVEEKAQKTSSPARNSPNKNVPDATVVTPRSPFLRTPREEDDDDEEVYKAANVEVSKRSGKKWRVVELFAFACIVGFFIACLTVNELQKRLIWGLELWKWCVLVLVVLCGRLVTEWFINVLVFLIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWGLLFNHGVERTRKVTKILNYITRALASCLLGAAIWLVKTLLIKLLASKFQSTRFFDRVQESIFHQYILKTLSGPPLREVAENVGWTSNSGQLSFKSMNNENQGEKEQVIDVDKLKKMKPEKVSAWTMKGLINVIKSSGLSTISYAPDEDENDQKDNEINSEWEAKAAAYRIFGNVAKPGHNYIDKDDLLRFMKNEEVENVLPLFEGAVETRRIKRKSLKNWLLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDVSTSVESIGALKAKLKVYLESRPQHWRPNHNVVVKDIENVNKLKMALYVTHTINFQNYGEKSNRRSELVLELKKIFEDLNIKYHLLPQEVHLSYVRSQDSTAQTF* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0274 684 SUPERFAMILY Sm-like ribonucleoproteins 505 564 IPR010920 -
Vra5g0274 684 PIRSF Memb_At2g17000 2 489 IPR016688 -
Vra5g0274 684 PIRSF Memb_At2g17000 488 683 IPR016688 -
Vra5g0274 684 Gene3D - 515 564 IPR023408 -
Vra5g0274 684 MobiDBLite consensus disorder prediction 34 57 - -
Vra5g0274 684 MobiDBLite consensus disorder prediction 111 149 - -
Vra5g0274 684 MobiDBLite consensus disorder prediction 34 73 - -
Vra5g0274 684 MobiDBLite consensus disorder prediction 112 132 - -
Vra5g0274 684 Pfam Mechanosensitive ion channel 490 661 IPR006685 GO:0016020|GO:0055085
Vra5g0274 684 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 10 488 IPR016688 -
Vra5g0274 684 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 489 675 IPR016688 -
Vra5g0274 684 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 489 675 - -
Vra5g0274 684 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 10 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0274 Vra-Chr5 2550002 2553788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0274 80 672 Mechanosensitive Ion Channel Family AT5G12080 48.645 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0274 K22048 - gmx:100777332 1024.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0274 5 2550002 2553788 Vra5g0274 5 2550002 2553788 ECH