Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0272 ATGTCGGTGAATCTCACCGAAAACGCGATTCCGGCGATAATTGGTGGCGACGTGAACGCCAAACCGCTTGTTCAGGTTTTGGACGTAGCGTTAGTCTCCAGCACCAACAACTCGCAGCAGCAGAGATACCGTCTCCTGATTTCCGACGCCGTTTTTTCTCACCACGCGATGCTCGCCACTCAGCTCAACGACCGAATCCGAACCGGTCGAGTTCGGAAGGGTTCGGTTGTTCAGCTTCTCGATTATATATGCACTCCTTTCAAGAACCGCAAGATTATTATGGTTCTAAACATGGAAACTATAATAGCTGATTTTGAGATCATTGGGAATCCGAAGCCACCCTTGGATTCAGATTTACCAAGTGTGAGAGCTATAGCAGATAACACTGTGGAGAATTTGGCCAGGAGTAATAATACTAGTAATACTATTAGTAACTCTGCTGCTCAAAATGCTAGTCAAGATAAAGCCCAGAATTTCAGGCCAACAATTCAACCTCCATACCAACCGCCTCCTGTTTACAAAGGCCGTGGTGCAGTTATGAAAAATGAGGCGCCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGTGATCTGCGCCGCTACAATAATGCACGTGGTGATGGGAAAGTCTTCTCATTTGATCTCCTGGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTTGTTGATCGCTTCTATAATGTAATTGAAGTTGGTAAAGTTTACATGATATCGAAAGGTAGCTTAAAACCTGCACAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTCTTTTGGAATCAACTTCAACAGTAGAGTTGTGCCCGGATGAGGATGATTCTATACCTAGACAGCAGTTCTCATTCCGACCTATCAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTTGTGACATCTGTGAACCCTTCTGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATTTTGAGTCTAAAAGACACTTCTGGCAGGAATGTTGAACTTACACTGTGGGGAGAATTTTGCAATAGGGAAGGGCAACAGTTGCAAGAGATGATAGACTCTGGGTTTTTCCCTATTTTAGCTGTCAAAGCCGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGCTCTATTTCTACCACACAGCTTTTCATAAATCCTGAGTTCCCTGAGGCCAATAGCTTAAGACAATGGTTTGATCTAGTTGGAAAAGATTCTGCTTCCCATTCAATTTCTAGGGACGTTATTCCTGGAGGAACGAAGAATGAGGTTCGCAAAACTGTATCTCAAATCAAGGATGAAGGTCTGGGACGATCAGACAGGCCAGACTGGATAACAATAAGGGCAACCATATCATTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAATGCAATAAAAAAGTGACTAGGTCAGGAAACACAAGTTGGCAATGTGATAGATGCAATCAGGAATTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATTCTGGATGGCACAGGAGTAACTTGGGTAACTGCTTTCCAGGAAGCAGGTGAAGAGATTATGGAGTATTCAGCGAAAGATCTGTACTTGTTGAAGCATGAACAACAGGATGATGAGAGGTTTGGAGAAATACTCAAGAGCCGACTCTTCAAACAGTTTATGTTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAGAAGGTCAAGATTACTGTAGTTAAGGTAGATAAGGTGAATTATTCTTCAGAGAGTCAATACATGCTTGATTCGATTTCCAAGTTTTGTAGGAAGTGA 1905 0.4252 MSVNLTENAIPAIIGGDVNAKPLVQVLDVALVSSTNNSQQQRYRLLISDAVFSHHAMLATQLNDRIRTGRVRKGSVVQLLDYICTPFKNRKIIMVLNMETIIADFEIIGNPKPPLDSDLPSVRAIADNTVENLARSNNTSNTISNSAAQNASQDKAQNFRPTIQPPYQPPPVYKGRGAVMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEILLESTSTVELCPDEDDSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDTSGRNVELTLWGEFCNREGQQLQEMIDSGFFPILAVKAGKVNDFSGKSIGSISTTQLFINPEFPEANSLRQWFDLVGKDSASHSISRDVIPGGTKNEVRKTVSQIKDEGLGRSDRPDWITIRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTSWQCDRCNQEFEECDYRYLLQAQILDGTGVTWVTAFQEAGEEIMEYSAKDLYLLKHEQQDDERFGEILKSRLFKQFMFRLKIKEELYGDEQKVKITVVKVDKVNYSSESQYMLDSISKFCRK* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0272 634 CDD RPA1_DBD_B 322 429 - -
Vra5g0272 634 SUPERFAMILY Nucleic acid-binding proteins 454 631 IPR012340 -
Vra5g0272 634 Gene3D - 187 297 IPR012340 -
Vra5g0272 634 Pfam Replication protein A OB domain 311 415 IPR031657 -
Vra5g0272 634 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vra5g0272 634 SUPERFAMILY Nucleic acid-binding proteins 187 301 IPR012340 -
Vra5g0272 634 Pfam Replication factor-A C terminal domain 473 624 IPR013955 -
Vra5g0272 634 Gene3D - 3 114 IPR012340 -
Vra5g0272 634 SUPERFAMILY Nucleic acid-binding proteins 305 432 IPR012340 -
Vra5g0272 634 MobiDBLite consensus disorder prediction 136 162 - -
Vra5g0272 634 CDD RPA1_DBD_C 457 630 IPR013955 -
Vra5g0272 634 Gene3D - 442 632 IPR012340 -
Vra5g0272 634 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vra5g0272 634 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 630 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vra5g0272 634 PANTHER REPLICATION FACTOR A 1, RFA1 2 628 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vra5g0272 634 Pfam OB-fold nucleic acid binding domain 202 283 IPR004365 GO:0003676
Vra5g0272 634 MobiDBLite consensus disorder prediction 136 168 - -
Vra5g0272 634 CDD RPA1_DBD_A 190 293 - -
Vra5g0272 634 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 628 - -
Vra5g0272 634 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Vra5g0272 634 Gene3D - 299 439 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0272 Vra-Chr5 2542610 2545404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0272 26 626 Core DNA Replication Machinery Family AT2G06510 68.842 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0272 K07466 - gmx:100792409 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0272 5 2542610 2545404 Vra5g0272 5 2542610 2545404 ECH