Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0269 ATGGAAACCAAGAAGTGCTGTGAAAAAGAAGGAGCATGGTCTTCTGACGAAGACGAAATCCTCTTGAACTATGTTCAACTCACTGGAGAAGGAAATTGGACGGACCTTCCCCAAAGAGCTGGGTTGAAACGATGTGGTGAGAGTTGCAAACATCGATGGCTGAACTATCTCAAGCAAACCATCCCCGGAGACAACTTTTCTTGGGATGAACAAGAACTCATTATCAAACTGCATAAACTCTTGGGGAATAGATGGTCAATGATTGCAGGAAGATTACCAGGACGCAGTGAAGACGAGATAAAGAAGTACTGGAATACGTATTTGAGCAAGAAGGTAGAAGAAAAGAAGAATGTGAGAAGAAGTAGTAGCATGTCTAGTGTTGAATCTCCATGGTTGTCTGAAAATGAGCATGCTATGAATTCCATGGAGTCTCCAAACCCTGTCATAGTTAGACCTAAAGTTTTTAGGTTAACCAAGCCTCTCGTGACAAGACTCGTAGGTACCTAA 507 0.4241 METKKCCEKEGAWSSDEDEILLNYVQLTGEGNWTDLPQRAGLKRCGESCKHRWLNYLKQTIPGDNFSWDEQELIIKLHKLLGNRWSMIAGRLPGRSEDEIKKYWNTYLSKKVEEKKNVRRSSSMSSVESPWLSENEHAMNSMESPNPVIVRPKVFRLTKPLVTRLVGT* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0269 168 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 159 - -
Vra5g0269 168 CDD SANT 65 108 IPR001005 -
Vra5g0269 168 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vra5g0269 168 Gene3D - 64 130 - -
Vra5g0269 168 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Vra5g0269 168 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Vra5g0269 168 Gene3D - 10 62 - -
Vra5g0269 168 CDD SANT 12 57 IPR001005 -
Vra5g0269 168 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vra5g0269 168 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Vra5g0269 168 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 159 - -
Vra5g0269 168 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Vra5g0269 168 SMART sant 9 59 IPR001005 -
Vra5g0269 168 SMART sant 62 110 IPR001005 -
Vra5g0269 168 SUPERFAMILY Homeodomain-like 10 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0269 Vra-Chr5 2513664 2514623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0269 6 115 MYB Transcription Factor Family AT2G16720 57.018 4.22e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g0269 Myb_DNA-binding 6.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0269 K09422 - gmx:778159 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0269 5 2513664 2514623 Vra7g2610 7 46352015 46354304 PCT