Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0267 ATGATGAATGGGAGGAACAGGTTTCCCTTCACCCCATCACAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAGTACATGGCTTCGGGAATTTCCATTCCACCTGATCTTCTCTTCACAATAAAAAGGAGCTACTTTGATCCCCCTCTGTCCTCAAGGCTTTTGCCTAACCAGCCACAGCACTTTGGATGGAACTACCTGCAGATGGGTTTGGGGAGAAAGATAGACCCTGAGCCTGGTAGGTGTAGAAGAACTGATGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCATCAACAAACACAAATGCTTCAACTCAACAACCAATCTCATCTATCACCAAACTCAATACTCTTTCTCCTCTTGCATCATCTGAATCACACCAACATCACCCTCCACACTATGCCTCCTTTCTCTATCACCACCCTCCATCGTCAAGGTCCTTTGAAGACAACAGTGCTCCCTTGTTTCTCGACACTGGCTCTTGCTCTCAGTCCAACACAGATTGCAGGAGTAGGTATGCATACGGAGAGAAGGAAGAGGTGGATGAGCACGCTTTCTTCACAGAGCCATGTGGTATAATGAAAAGCTTTTCTGCTTCCTCTATGGATGATTCTTGGCAACTCACACCATTGACAATGAGCTCCTCTTCTTCTTCCACCAAACAGAGGAGTTCCTTTGGCTTGTCCAATGATTATTCTTGCTTGCAACTTCAAAGCCACTCAAAGCAGCAGGAGCAACAAGATCAGGGTGGTTGCTACATGCTGGGTGGAGGCCAACTTGGAAAAGAAGAGCCTCAGAAAACCGTCCATCGCTTCTTTGATGAATGGCCCCACAAAGGAAGACAAGGATCTTGGCTCGATTTGGATGACAAATCCTCCACAACCCAACTTTCAATTTCCATTCCCACCTCTTCTCACGACTTTCCAGCCTTCAGTTCCAGAACCCACCATGATGGTTGA 1047 0.4642 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYFDPPLSSRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPSTNTNASTQQPISSITKLNTLSPLASSESHQHHPPHYASFLYHHPPSSRSFEDNSAPLFLDTGSCSQSNTDCRSRYAYGEKEEVDEHAFFTEPCGIMKSFSASSMDDSWQLTPLTMSSSSSSTKQRSSFGLSNDYSCLQLQSHSKQQEQQDQGGCYMLGGGQLGKEEPQKTVHRFFDEWPHKGRQGSWLDLDDKSSTTQLSISIPTSSHDFPAFSSRTHHDG* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0267 348 Pfam WRC 78 120 IPR014977 -
Vra5g0267 348 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra5g0267 348 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Vra5g0267 348 PANTHER - 2 335 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vra5g0267 348 MobiDBLite consensus disorder prediction 108 138 - -
Vra5g0267 348 MobiDBLite consensus disorder prediction 326 348 - -
Vra5g0267 348 MobiDBLite consensus disorder prediction 120 138 - -
Vra5g0267 348 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra5g0267 348 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra5g0267 348 PANTHER GROWTH-REGULATING FACTOR 6 2 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0267 Vra-Chr5 2469937 2472240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0267 7 120 GRF Transcription Factor Family AT3G13960 71.053 4.73e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vra5g0267 WRC 7.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0267 - - gmx:100814271 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0267 5 2469937 2472240 Vra5g0267 5 2469937 2472240 ECH
Vra7g2613 7 46377140 46379701 Vra5g0267 5 2469937 2472240 PCT