Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0257 ATGACCCTCATGAAAAGCATATGGAAATCCATCTTCCCTGGTTGTTACAAGGGTGAGTACCCATCTCCGAAGCCAAAGAAGGTGGTGGCTACAAAGCCAAATTCTTCTCACAGGATTTCTGTGACGGATTTGAGTTATCCAAGCACGACTCTTTCAGAGGATCTCTCCGTTTCTCTGGCGGGGACCAACCTCCATGTTTTCTCACTTGCTGAGCTCAAGATCATCACGCAGTCTTTCTCTTCTAGCAACTTTCTAGGAGAAGGAGGGTTCGGACCAGTGCATAAAGGGTTCATCGATGACAAGCTCAGGCATGGCCTTAAGGCTCAACCCGTGGCTGTTAAGCTCTTGGACTTGGATGGCTCGCAGGGCCACAAAGAGTGGTTGACCGAAGTTGTTTTTCTGGGTCAACTGAGGCATCCACATCTGGTGAAGCTGATAGGATACTGTTGTGAAGAAGAACACAGACTTTTGGTGTATGAATATTTACCAAGAGGCAGCTTGGAGAATCAATTATTTAGAAGATTCACAGCATCACTACCATGGTCAACGAGAATGAAAATTGCTGTTGGGGCTGCCAAGGGTCTAGCCTTTCTTCACGAAGCCGAGAAGCCGGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTGTTAGATTCTGATTACAATGCAAAGCTATCAGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGTGATGACACCCACGTTTCAACCCGAGTAATGGGCACACATGGATACGCAGCCCCAGAATATGTGATGACAGGTCATTTGACAGCAATGAGTGATGTGTATAGTTTTGGGGTAGTGTTGTTGGAGTTGCTGACAGGGAGAAGGTCAGTGGACAAGAACCGTCCTCCAAGGGAACAGAACCTAGTGGAGTGGGCAAGGCCAATGCTGAATGATTCAAGGAAAGTGAGTAGGATAATGGACCCTAGACTTGAAGGGCAGTATTCAGAAATGGGGACGAAAAAAGCAGCTGCATTGGCTTACCAATGTCTGAGCCACAGACCTAGGAGCAGACCCTCCATGAGTACAGTGGTTAAGATCCTTGAGCCACTTCAGGATTTTGATGACATTCCAATGGGAACATTTGTCTACACTGCTCCACAAGATCATAACAATGAAGTGCAAAGGGATGCAAAGGATCAATGTGAAACACCTAGAAGAAGGGAAAACAACAGCAATGGCCAACACCATCGCAGGAACCACAACCTTAACAGACATCATCCTCTCAAGTCCCCAAAGAGCCCCAAGCCACAACATTTACGTTCACCGAATGATCACAACAACAAACACAGAAATGGTACACGAAGTGGATCAAACTCTCCTCCAGGAATCATTACCTAA 1365 0.463 MTLMKSIWKSIFPGCYKGEYPSPKPKKVVATKPNSSHRISVTDLSYPSTTLSEDLSVSLAGTNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRHGLKAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLNDSRKVSRIMDPRLEGQYSEMGTKKAAALAYQCLSHRPRSRPSMSTVVKILEPLQDFDDIPMGTFVYTAPQDHNNEVQRDAKDQCETPRRRENNSNGQHHRRNHNLNRHHPLKSPKSPKPQHLRSPNDHNNKHRNGTRSGSNSPPGIIT* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0257 454 MobiDBLite consensus disorder prediction 400 422 - -
Vra5g0257 454 Gene3D Transferase(Phosphotransferase) domain 1 162 372 - -
Vra5g0257 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vra5g0257 454 PANTHER OS01G0588500 PROTEIN-RELATED 23 415 - -
Vra5g0257 454 Pfam Protein tyrosine and serine/threonine kinase 83 356 IPR001245 GO:0004672|GO:0006468
Vra5g0257 454 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 23 415 - -
Vra5g0257 454 MobiDBLite consensus disorder prediction 373 454 - -
Vra5g0257 454 SUPERFAMILY Protein kinase-like (PK-like) 55 357 IPR011009 -
Vra5g0257 454 Gene3D Phosphorylase Kinase; domain 1 42 161 - -
Vra5g0257 454 MobiDBLite consensus disorder prediction 380 399 - -
Vra5g0257 454 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0257 454 CDD STKc_IRAK 85 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0257 Vra-Chr5 2358877 2361707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0257 65 356 Glycoside Hydrolase AT3G07070 53.898 4.96e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra5g0257 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0257 - - gmx:100797003 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0257 5 2358877 2361707 Vra5g0257 5 2358877 2361707 ECH
Vra7g2626 7 46497705 46500313 Vra5g0257 5 2358877 2361707 PCT