Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0251 ATGCAGAAGAAGTCGACATTGCCACTGAGCGACGCGAATGCGAACAGAAAGAGGAAGGAAGTGCACAGCAAGGAAACGTTGGTGAAGCTTCTAAGATGGCATTTTGGGTACCCTGATTTTAGGGGCATGCAATTGGACGCTATTCAGTCGGTGCTTTCAGGAAAGGATTGTTTTTGTCTTATGCCAACTGGGGGAGGCAAGTCAATGTGTTATCAGATCCCTGCATTGGCAAAACCAGGAATTGTGCTCGTTGTATCTCCTTTAATAGCCTTAATGGAAAACCAAGTAATGGCACTGAAAGAGAAAGGGATTGCAGCAGATTTTCTCTCCTCAACAAAAACAGCGGATGCTAAAGTAAAGATTCACGAGGACCTTGATTCTGGAAAACCTTCTACAAGGCTGCTATATGTGACTCCAGAGTTAATAGCAACACCAGGGTTTATGTCAAAGCTCACAAAGATTTATACTAGGGGGCTGCTAAATCTCATTGCCATAGATGAGGCACATTGCATCTCAAGTTGGGGTCACGATTTCAGACCTAGCTACCGTAAGCTTTCATCTTTGAGAAGCCACTTACCAGATGTACCAATATTAGCTTTGACTGCTACCGCTGCGCCAAAGGTTCAGAAGGATGTAGTTGAATCCTTGCGGATGCAAAATCCATTAATACTCAAGTCTTCATTTAATCGTCCAAATATATATTATGAAGTTAGATACAAAGATCTATTGGATGATGCTTGTGCTGATTTATCTAATACACTCAAATCTCTGGGAGATGTCTGTGCAATAGTGTATTGCCTTGAACGTTCAATGTGTGATGACTTATCAAGTAATCTATCCCAAAATGGTATTTCATGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCGGTGTTAGATGATTGGATTTCTTCTAAGATAAAAGTTATTGTTGCCACAGTGGCTTTTGGAATGGGCATTGATAGAAAGGATGTCAGAATTGTTTGCCATTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCCGGCCGAGCTGGTCGTGATCAATTGCCATCTAGAAGTCTTTTGTACTATGGGATAGACGATCGCAAAAGAATGGAATTTATATTAAGTAAATCAGGGAGCAAGAAGTCATCTAGTTCACAGGAAGAGTCATCCAAAATATCCCTGATTGCTTTCAATCAGATAGTTGAATACTGTGAAGGATCTGGATGCCGCAGGAAAAGAATTCTTGAGAGTTTTGGGGAAGAGGTAACTGCATCACTATGTGGAAAAACATGTGATGCCTGCAGACATGCAAACTTAGTTTCCCGATGTTTGGAGGATCTCAAAACTGTTTGTGCTCTGCATCGTAAAAATGGTTCATCTCGAGTTTTTATAACCAGTTCCAGTGCCGCAACTACTACTGGAGAACAGTTATCTGAATTCTGGAATCGTGGAGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGATTCAGAAGATGATAATGAGGTTATCAACAACCTAACCAGGTCAAAGCTTCAATCCAAATTGGGAGTAAATGAAAAGCTTGCTATGTTACAACGGGCAGAAGAAAACTTCTATAGAAATAATAACACTTATAAACAGAACAACAAAGGTGACAAGAATGCTATTTCGGATCCAATGCGAGTATCAAGCAGGCAAAGGTTACAAAATGCTCTTAAACAGGTTCACCAACGGCTTGACGACTTCAAGATTGAAGTGGATACGTCAGCATCTTTCCTTGAAGATGAATGCTACAAGAAGTATGGCAAGGCTGGTAAATCATTCTATTATTCGCAAGTGGCAAGTACTGTAAGATGGCTGACGACTGCCACCTCCAGCGAATTGATGAACCGACTTTGTGCAATTAATGCTTCTGCTGAAGCTGAACAGTCCCTTACGCCAGCTGAACAGCCCTTCAAACCGCCACCTACTTTAGATCCTTGTGCAGAAGATACCAGCAATGAATACTCTGGCAATGCTAGATCAGAAACTTCTCCATGTATTGTGCCAATGGAAAGCTGTTCGTTTAATAATACCAACTTGCCACAAATACCATCCTTCTCTGAATTCGTTAATAGTAGGAAAACAAAAGGGGAGCAGTTAAATGACACAAAGAAGCATTCAAGAACCGAAAAGAGGATGAGGATGCAGTAA 2178 0.4091 MQKKSTLPLSDANANRKRKEVHSKETLVKLLRWHFGYPDFRGMQLDAIQSVLSGKDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAADFLSSTKTADAKVKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLTKIYTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAAPKVQKDVVESLRMQNPLILKSSFNRPNIYYEVRYKDLLDDACADLSNTLKSLGDVCAIVYCLERSMCDDLSSNLSQNGISCAAYHAGLNNKMRTSVLDDWISSKIKVIVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGIDDRKRMEFILSKSGSKKSSSSQEESSKISLIAFNQIVEYCEGSGCRRKRILESFGEEVTASLCGKTCDACRHANLVSRCLEDLKTVCALHRKNGSSRVFITSSSAATTTGEQLSEFWNRGEEASGSEEDISDSEDDNEVINNLTRSKLQSKLGVNEKLAMLQRAEENFYRNNNTYKQNNKGDKNAISDPMRVSSRQRLQNALKQVHQRLDDFKIEVDTSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTATSSELMNRLCAINASAEAEQSLTPAEQPFKPPPTLDPCAEDTSNEYSGNARSETSPCIVPMESCSFNNTNLPQIPSFSEFVNSRKTKGEQLNDTKKHSRTEKRMRMQ* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0251 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 394 IPR001650 -
Vra5g0251 725 Coils Coil 560 580 - -
Vra5g0251 725 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 30 440 IPR004589 GO:0004386|GO:0006310
Vra5g0251 725 Gene3D - 230 454 IPR027417 -
Vra5g0251 725 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 710 - -
Vra5g0251 725 Pfam DEAD/DEAH box helicase 43 210 IPR011545 GO:0003676|GO:0005524
Vra5g0251 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Vra5g0251 725 Pfam RecQ zinc-binding 367 436 IPR032284 -
Vra5g0251 725 SMART helicmild6 273 354 IPR001650 -
Vra5g0251 725 Gene3D - 2 229 IPR027417 -
Vra5g0251 725 MobiDBLite consensus disorder prediction 704 725 - -
Vra5g0251 725 MobiDBLite consensus disorder prediction 700 725 - -
Vra5g0251 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 374 IPR027417 -
Vra5g0251 725 CDD SF2_C_RecQ 230 363 - -
Vra5g0251 725 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 4 710 - -
Vra5g0251 725 CDD DEXHc_RecQ 29 229 - -
Vra5g0251 725 MobiDBLite consensus disorder prediction 638 671 - -
Vra5g0251 725 Pfam Helicase conserved C-terminal domain 256 352 IPR001650 -
Vra5g0251 725 SMART ultradead3 36 238 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0251 Vra-Chr5 2287405 2295433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0251 33 352 Eukaryotic Initiation Factors Gene Family AT3G19760 21.893 1.14e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0251 - K10901 gmx:100819601 1211.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0251 5 2287405 2295433 Vra5g0251 5 2287405 2295433 ECH