Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0250 ATGGCACGTGAGTTCAACGATGTTGCAGCAACGCTCCAATCCATACGCTACAACCGCGGTTCCCTCCACCTTCTCGACCAGAGAAAGCTCCCTCTGGAGACAACTTACTTGGAAATTCGGGATTCAACAGATGGCTGGAATGCCATTCAGGATATGGTGGTCCGAGGAGCACCTGCTATTGCGATTGCAGCGGCACTCTCTTTGGCTGTGGAGGTGTTCAACTTAGACGGTTTCAATGGGTCAGCTGGTGAAGCTGTTTCCATCCTGCAGAATAAATTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTGAATCTATCGGATGCTGCGGGAAAACTCAAAGAAGTCGTATCAAATGCTGCTGCTACCACTTCAGAGGGCAGGAGTGTTTTCCAGGCATTTATAGAAGCTGCTGAAGTTATGCTTGAGGATGATGTTGCCTCAAATCGAGCTATTGGCTCTTACGGAGCTAGCTGTATTCAGCAACAAACTGGGAAACAAAAGCTTTCTGTTTTGACGCATTGCAATACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTTTGGGTGTGATCCGTGCACTTCACAGTGCAGGAGTTCTAGAAAGGGCTTATTGCACTGAAACACGCCCATTTAATCAAGGATCTAGACTTACTGCCTATGAGTTGGTGCATGAAAAAATACCAGCAACTCTTATTGCTGATTCTGCTGCAGCTGCACTAATGAAAGCAGGAAGTGTGGATGCTGTTGTTGTTGGGGCTGATCGTGTTGCATCAAATGGTGACACAGCCAACAAAATTGGAACCTACAGTGTTGCCTTGTCGGCAAAGTTTCATAATGTACCTTTTTATGTGGCTGCCCCCCTCACCTCCGTTGATCTATCACTTTCTTCTGGACAAGAAATTGTAATTGAGGAGAGGTCTCCCAAGGAATTGTTGAACGCACGTGGAGGACTTGGAGAGCAGGTTGCTGCGTCAGGAATTTCTGTGTGGAACCCAGCTTTCGATGTTACTCCTGCTAGTCTGATATCTGGGATCATCACGGAGAAGGGTGTCATTACGAAGACTTCTGCTGATGATGCATTCGACATCAAAGCTTTCGTACAGAAAACTGGTTAA 1119 0.4674 MAREFNDVAATLQSIRYNRGSLHLLDQRKLPLETTYLEIRDSTDGWNAIQDMVVRGAPAIAIAAALSLAVEVFNLDGFNGSAGEAVSILQNKLEYLVSSRPTAVNLSDAAGKLKEVVSNAAATTSEGRSVFQAFIEAAEVMLEDDVASNRAIGSYGASCIQQQTGKQKLSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAAAALMKAGSVDAVVVGADRVASNGDTANKIGTYSVALSAKFHNVPFYVAAPLTSVDLSLSSGQEIVIEERSPKELLNARGGLGEQVAASGISVWNPAFDVTPASLISGIITEKGVITKTSADDAFDIKAFVQKTG* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0250 372 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 10 369 - -
Vra5g0250 372 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 40 355 IPR011559 GO:0044249
Vra5g0250 372 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 12 364 IPR005251 -
Vra5g0250 372 SUPERFAMILY NagB/RpiA/CoA transferase-like 10 357 IPR037171 -
Vra5g0250 372 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 10 369 - -
Vra5g0250 372 Pfam Initiation factor 2 subunit family 54 354 IPR000649 GO:0044237
Vra5g0250 372 Gene3D - 10 201 IPR027363 -
Vra5g0250 372 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 13 355 IPR005251 -
Vra5g0250 372 Gene3D - 202 367 IPR042529 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0250 50 370 Eukaryotic Initiation Factors Gene Family AT2G05830 77.329 3.88e-173 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0250 K08963 - gmx:100799311 605.905