Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0245 ATGGCCGCTGTTCGCTTTCACCACCACCTCCTTCTCCTCTTCTTCCACCTCTTCTTCACTCTCTCTTCTTCAACCGAAACCCAATCCCTCCTCCGTCTCAAGCAGTCCCTTGTCAACGGCGATCGCTCTCTCTCCTCCTGGATCCCCAACGTCTCGCCTTGCTCTGGCACCTGGCTAGGCGTTGTTTGCTTCAACGGGGTCATCACGGGCCTGCATCTCTCCGACTTGGACCTCTCGGGACCAATCGACGTCGACGCCCTGGCGGAGATTCGCGGCCTCAGAACTCTCAGCTTCATCAACAACTCCTTCACGGGACCAATCCCGGCGTTCAACAAACTGGGCTCAATCAAGTCCCTCCTTTTAACCCAAAACCGTTTCTCCGGACCAATCCCAAACGACTTTTTCGACCCGTTGAACTCCCTCAAGAAACTCTGGCTCTCCGGCAACCGCTTCAACGGCACCATCCCCCAATCCCTAACCCAGCTCGACCTCCTCAAAGAACTCCACCTCGAGTACAACTCCTTCTCGGGCTTAATCCCTAACTTCGGCCAACGGCTAAAATCGCTGGACCTCTCCTTCAACAAACTCGAAGGGCCCATTCCCGAGAGTCTGGCGACGTTCACCGTGGACTCGTTCGTAGGAAACGATGAACTGTGCGGTAAACCGTTGGTGAAGGCGTGCGAGGTTTCCGACACGTCATACTCGATGGCGAGCAACGTGGGAGAGGAGGAGTACGGAAGCGGGTGGGGGAGGAAGGTGATCGTGGTGCTGGTGGTGGTGTCGGTGGCGGCGTTGTTATTTCTGCTTTTGACGCGGAAGAAGCGGGTGGAGTTCACGGCGGTGAGCAGGAACAGCAACGCGGAGGAGGCTGTGGAGGTGCAGGTGGCGAGCGTGAGGGGGAGCGTGGGGGGGAGCGTGGGAGAGAGGAGGGAGAACAAGAGGGGGGACATAGTGATGGTGAACGAGACGAGAGGGGTGTTTGGGCTACAAGACATGATGAAGGCGGCAGCGGAGGTGCTGGGGAACGGTGGGCTGGGGTCGGCGTACAAGGCGGCGATGACGAACGGACTGTGCGTGGTGGTGAAGAGGATGAGGGAGGTGAATAAGATGGGGAAGGAGGTGTTCGACGCGGAGATGAGGCAGTTCGGAAGGATACGACACCGTAACATCATCACTCCCCTGGCTTACCACTACAGAAGGGAGGAGAAGCTCCTGATAACCGAGTACATGCCGAAAGGAAGCTTGTTCTATGTATTGCATGGTGATAGAGGTCTATCACATTCTGAATTGACATGGCCAATTCGTTTGAGGATTGTGAAGGGAATTGCAAGAGGGTTGGGATTTCTTTACACTGAATTTTCCACATACGATTTGCCTCATGGGAATCTTAAATCTTGCAATGTTCTTCTAAGTGATGATTATGAGCCTCTTTTGAGTGACTATGCATTTCAGCCACTGGTGAACCCGAATGTTGCAGTGCAGGCATTGTTTGCCTTCAAAACCCCAGACTTTGTGCAAAACCAAAAAGTTACACAGAAGACAGATGTTTACTGCCTCGGAATAATCATTCTTGAAGTGATCACTGGCAAGTTCCCTGCCCAGTATCACAGCAATGGCAAGGGTGGTACTGATGTTGTTCAATGGGCCCATTCTGCTGTTTCAGAAGGAATGGAAGTTGAATTGGTCGATCCAGAGTTGTCATCAAACGACACAAATTCACGCAATCAGATGCTAAAACTTCTCCGTATTGGTGTTGCTTGCACCGAAAGTAACTCTGATCAAAGACCAAAAATGAAAGAAGCTATTAGAAGGATAGAGGAGGTACAGGTTTAA 1833 0.5248 MAAVRFHHHLLLLFFHLFFTLSSSTETQSLLRLKQSLVNGDRSLSSWIPNVSPCSGTWLGVVCFNGVITGLHLSDLDLSGPIDVDALAEIRGLRTLSFINNSFTGPIPAFNKLGSIKSLLLTQNRFSGPIPNDFFDPLNSLKKLWLSGNRFNGTIPQSLTQLDLLKELHLEYNSFSGLIPNFGQRLKSLDLSFNKLEGPIPESLATFTVDSFVGNDELCGKPLVKACEVSDTSYSMASNVGEEEYGSGWGRKVIVVLVVVSVAALLFLLLTRKKRVEFTAVSRNSNAEEAVEVQVASVRGSVGGSVGERRENKRGDIVMVNETRGVFGLQDMMKAAAEVLGNGGLGSAYKAAMTNGLCVVVKRMREVNKMGKEVFDAEMRQFGRIRHRNIITPLAYHYRREEKLLITEYMPKGSLFYVLHGDRGLSHSELTWPIRLRIVKGIARGLGFLYTEFSTYDLPHGNLKSCNVLLSDDYEPLLSDYAFQPLVNPNVAVQALFAFKTPDFVQNQKVTQKTDVYCLGIIILEVITGKFPAQYHSNGKGGTDVVQWAHSAVSEGMEVELVDPELSSNDTNSRNQMLKLLRIGVACTESNSDQRPKMKEAIRRIEEVQV* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0245 610 Gene3D Transferase(Phosphotransferase) domain 1 410 610 - -
Vra5g0245 610 Gene3D Ribonuclease Inhibitor 185 230 IPR032675 -
Vra5g0245 610 SUPERFAMILY Protein kinase-like (PK-like) 338 605 IPR011009 -
Vra5g0245 610 SUPERFAMILY L domain-like 28 206 - -
Vra5g0245 610 PANTHER LRR RECEPTOR-LIKE KINASE 7 610 - -
Vra5g0245 610 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Vra5g0245 610 Pfam Leucine Rich Repeat 185 204 IPR001611 GO:0005515
Vra5g0245 610 Gene3D Ribonuclease Inhibitor 23 184 IPR032675 -
Vra5g0245 610 Gene3D Phosphorylase Kinase; domain 1 304 409 - -
Vra5g0245 610 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 610 - -
Vra5g0245 610 Pfam Protein kinase domain 338 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0245 610 ProSiteProfiles Protein kinase domain profile. 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0245 Vra-Chr5 2240945 2242954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0245 1 608 Receptor kinase-like Gene Family AT3G42880 48.674 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra5g0245 Pkinase 7.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0245 - - vun:114162805 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2637 7 46606033 46608444 Vra5g0245 5 2240945 2242954 PCT