Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0244 ATGGCTTTAGCAGTTTCCTCCACTGCATTGTCAAGTCTTCCAAACAGGTCTTTTAGCAGAGAAATACATCAAAAGGTTAATTTGGCCGAAAGAACAGGGACATGGTTGGGTTTGAGCAGAAGAACAACTGCAAATGCAACAAAAGGAGTGTCAGCTGTGTGTGAGCCACTTCCTCCAGATAGACCATTGTGGTTCCCTGGTAGTTCACCTCCTGAGTGGCTCGATGGCAGTCTTCCCGGTGATTTCGGTTTTGATCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTAAAGTGGTTCGCTCAAGCGGAACTAGTACATGGAAGATGGGCGATGCTTGCAGTGTTTGGAATTCTGGTTCCGGAGTTGCTGGAAAGACTTGGTTACGTTGACAACTTCAACTGGTACGATGCCGGATCGCGAGAGTACTTTACAGACCACACAACGCTGTTCGTGGCGCAAATGGGCCTGATGGGCTGGGTGGAGGGTCGAAGATGGGCCGACATGCTTAACCCAGGAAGCGTTGACATTGAGCCCAAAGTGCCTCACATTACGAACCCGAAGCCCGATGTCGGGTACCCGGGTGGGCTGTGGTTTGACCCGATGGACTGGGGTCGTGGGTCACCTGAACCAGTGATGGTGTTGAGGACGAAGGAGATAAAGAATGGAAGACTTGCAATGCTGGCATTTGTAGGGTTCTGGTTTCAAGCTATTTACGTTGGAGCTGATCCCATTGAAAATTTGATGGCTCACCTTGCTGATCCTGGCCACTGCAACGTTTTCTCGGCTTTCACGCGGTAA 798 0.5025 MALAVSSTALSSLPNRSFSREIHQKVNLAERTGTWLGLSRRTTANATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELVHGRWAMLAVFGILVPELLERLGYVDNFNWYDAGSREYFTDHTTLFVAQMGLMGWVEGRRWADMLNPGSVDIEPKVPHITNPKPDVGYPGGLWFDPMDWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYVGADPIENLMAHLADPGHCNVFSAFTR* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0244 265 Pfam Chlorophyll A-B binding protein 70 236 IPR022796 -
Vra5g0244 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 263 IPR001344 GO:0009765|GO:0016020
Vra5g0244 265 Gene3D Chlorophyll a/b binding protein domain 71 256 - -
Vra5g0244 265 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 263 - -
Vra5g0244 265 SUPERFAMILY Chlorophyll a-b binding protein 60 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0244 Vra-Chr5 2236487 2237782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0244 59 264 Chloroplast and Mitochondria Gene Families AT3G61470 66.019 6.39e-101 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0244 K08908 - gmx:100800374 481.87