Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra5g0242 | ATGTCCAGCTCGTCGGAGTACTCTGAATTTTCCGGCCAGAAACCGGCCAAGTCGCCGGAGAAGTCGAGCTTCTCTCAAACCTGCAGTCTGTTGAGTCAATACATCAAGGAGAAGGGTAGCTTTGGAGATCTCACCCTCGGTATGACATGCAACGCTGAACCATGTGGGTCACCTGAAACTTCTTGTCAATCTGCTACAACTATGAACTTGTTTCCTACCAAGGAAAACAACGTAACACCAAAGAACCTGACAGCTATGGATTTGCTCTCTCCGCAAGCTTCCTATCGTCCTTCAGAGGAGATTCCAACCTTGGTTAATTCCAGTGCAATTAAGTCTGTGAACAAGGGTGCTAAAACTGCTCAGATGACAATCTTTTATGGAGGACAAGTTGTTGTGTTTGATGATTTTCCTGCTGACAAAGCAAATGAGATCATGTCCTATGCTAGAGGGAAGCCACAGAGCCAGAACAATTCTGTTTTCACTTACACACAGAGCCAGCCTTCATTTCCTCCTAATTTGATCAGAACTTCTGCTGATTCAAGCGCTCCAATTATTCCCTCTGTGACTCTTACCAACTCCATCCATGAACACTCTCAACCATCATCCAGGCCTGTTGTTTGTGATCCACCAATTGCTAGAAAAGCTTCACTCCACCGGTTTCTTTTGAAGAGAAAGGATAGAATTGCTTCCAAAGCTCCATATCAAGTACCAAACGGGCCATCAGCTGAGTCCTTGCCATGGCTTGGGTTGAATGCTACTTCACCTAAAATCTGA | 774 | 0.4522 | MSSSSEYSEFSGQKPAKSPEKSSFSQTCSLLSQYIKEKGSFGDLTLGMTCNAEPCGSPETSCQSATTMNLFPTKENNVTPKNLTAMDLLSPQASYRPSEEIPTLVNSSAIKSVNKGAKTAQMTIFYGGQVVVFDDFPADKANEIMSYARGKPQSQNNSVFTYTQSQPSFPPNLIRTSADSSAPIIPSVTLTNSIHEHSQPSSRPVVCDPPIARKASLHRFLLKRKDRIASKAPYQVPNGPSAESLPWLGLNATSPKI* | 258 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra5g0242 | 257 | Pfam | Jas motif | 210 | 235 | IPR018467 | - | |
Vra5g0242 | 257 | ProSiteProfiles | Tify domain profile. | 115 | 150 | IPR010399 | - | |
Vra5g0242 | 257 | MobiDBLite | consensus disorder prediction | 232 | 257 | - | - | |
Vra5g0242 | 257 | PANTHER | PROTEIN TIFY 4A-RELATED-RELATED | 17 | 251 | IPR040390 | - | |
Vra5g0242 | 257 | SMART | tify_2 | 115 | 150 | IPR010399 | - | |
Vra5g0242 | 257 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vra5g0242 | 257 | Pfam | tify domain | 118 | 148 | IPR010399 | - | |
Vra5g0242 | 257 | PANTHER | PROTEIN TIFY 10A | 17 | 251 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra5g0242 | Vra-Chr5 | 2200104 | 2202555 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra5g0242 | 1 | 252 | Tify Gene Family | AT1G19180 | 40.364 | 5.07e-46 | 152 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | Tify | Vra5g0242 | tify | 6.3e-18 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra5g0242 | K13464 | - | gmx:100801449 | 425.246 |