Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0242 ATGTCCAGCTCGTCGGAGTACTCTGAATTTTCCGGCCAGAAACCGGCCAAGTCGCCGGAGAAGTCGAGCTTCTCTCAAACCTGCAGTCTGTTGAGTCAATACATCAAGGAGAAGGGTAGCTTTGGAGATCTCACCCTCGGTATGACATGCAACGCTGAACCATGTGGGTCACCTGAAACTTCTTGTCAATCTGCTACAACTATGAACTTGTTTCCTACCAAGGAAAACAACGTAACACCAAAGAACCTGACAGCTATGGATTTGCTCTCTCCGCAAGCTTCCTATCGTCCTTCAGAGGAGATTCCAACCTTGGTTAATTCCAGTGCAATTAAGTCTGTGAACAAGGGTGCTAAAACTGCTCAGATGACAATCTTTTATGGAGGACAAGTTGTTGTGTTTGATGATTTTCCTGCTGACAAAGCAAATGAGATCATGTCCTATGCTAGAGGGAAGCCACAGAGCCAGAACAATTCTGTTTTCACTTACACACAGAGCCAGCCTTCATTTCCTCCTAATTTGATCAGAACTTCTGCTGATTCAAGCGCTCCAATTATTCCCTCTGTGACTCTTACCAACTCCATCCATGAACACTCTCAACCATCATCCAGGCCTGTTGTTTGTGATCCACCAATTGCTAGAAAAGCTTCACTCCACCGGTTTCTTTTGAAGAGAAAGGATAGAATTGCTTCCAAAGCTCCATATCAAGTACCAAACGGGCCATCAGCTGAGTCCTTGCCATGGCTTGGGTTGAATGCTACTTCACCTAAAATCTGA 774 0.4522 MSSSSEYSEFSGQKPAKSPEKSSFSQTCSLLSQYIKEKGSFGDLTLGMTCNAEPCGSPETSCQSATTMNLFPTKENNVTPKNLTAMDLLSPQASYRPSEEIPTLVNSSAIKSVNKGAKTAQMTIFYGGQVVVFDDFPADKANEIMSYARGKPQSQNNSVFTYTQSQPSFPPNLIRTSADSSAPIIPSVTLTNSIHEHSQPSSRPVVCDPPIARKASLHRFLLKRKDRIASKAPYQVPNGPSAESLPWLGLNATSPKI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0242 257 Pfam Jas motif 210 235 IPR018467 -
Vra5g0242 257 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
Vra5g0242 257 MobiDBLite consensus disorder prediction 232 257 - -
Vra5g0242 257 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 251 IPR040390 -
Vra5g0242 257 SMART tify_2 115 150 IPR010399 -
Vra5g0242 257 MobiDBLite consensus disorder prediction 1 23 - -
Vra5g0242 257 Pfam tify domain 118 148 IPR010399 -
Vra5g0242 257 PANTHER PROTEIN TIFY 10A 17 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0242 Vra-Chr5 2200104 2202555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0242 1 252 Tify Gene Family AT1G19180 40.364 5.07e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vra5g0242 tify 6.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0242 K13464 - gmx:100801449 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2639 7 46622030 46624009 Vra5g0242 5 2200104 2202555 PCT