Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0239 ATGGTGAAGCCTGGTGGCGTGGAAAAAACTACGGAGGAGCGAACCAATACGTCGTACAGGGGAGTACGAAAGAGGAAGTGGGGAAAGTACGTGTCGGAAATTAGGCTTCCCAACAGCCGTAAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAGAAGGCGGCGCGCGCCTTCGACGCGGCCATGTTCTGCTTACGTGGCAGTGGCGCCAAATTTAACTTCCCGAATGACCCGCCCAACATCGCTGGGGGGAGGACCATGACCCCCCCTCAGATTCAGATAGCCGCGGCTCGTTTCGCCAATTCGGAGCCCCAGAGAGAGTGTTCCGGTCAACAACACGTGGAGTCTTTAGCTTCGGACGAGGAGATGGCGTCGTTCAGGTTGGAGTCGTCGTCTCCTCCTCTCTCCGACGTGTCGGTTCAGAACGACCCCATATTCCAAAACGGGTCATTCCCCGACCCGTTTTCGGATCTCGGGTCGGGCAGTTTCGCCCCGGAGTTCTCCGATTTTCCGTGTTTCGACGATTTCAGCCGCGATTTCTTCTTGCCGGGGCTTCCGAGTTTCGATGACGGAGAAGAGAACGTGGACGGGATGATAGTCCAGGACCCGTTCTTGTGGAACTTCTAA 627 0.5646 MVKPGGVEKTTEERTNTSYRGVRKRKWGKYVSEIRLPNSRKRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPNDPPNIAGGRTMTPPQIQIAAARFANSEPQRECSGQQHVESLASDEEMASFRLESSSPPLSDVSVQNDPIFQNGSFPDPFSDLGSGSFAPEFSDFPCFDDFSRDFFLPGLPSFDDGEENVDGMIVQDPFLWNF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0239 208 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Vra5g0239 208 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g0239 208 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 6 208 - -
Vra5g0239 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 208 - -
Vra5g0239 208 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Vra5g0239 208 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Vra5g0239 208 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vra5g0239 208 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vra5g0239 208 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vra5g0239 208 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Vra5g0239 208 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0239 Vra-Chr5 2151198 2152455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0239 17 208 AP2-EREBP Transcription Factor Family AT1G19210 48.259 7.41e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g0239 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0239 - - gmx:100802508 311.997