Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0238 ATGGCCAGCACTCAGCTCACAGCAATAGCGTCATCAGTCCCTACGACATCGTTTGAAAGGCTTCGGCCTTCGACATTTCAGATGGGCCGTGTGAGGATTGGCAATCTTCCCCAGAGGTCTTTCAGGGGGTTGGTAGTTAAAGCTGCCACTGTTGTTGCCCCTAAGTACACCGCAATTAAGCCTCTGGGTGACAGAGTACTGATAAAAGTTAAGGAAGCAGAAGAGAAAACTGACGGTGGGATTTTGCTTCCCTCAACCGCTCAAACTAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGTGAAGGAAAGACAGTTGGGAAGTCAAAAGTAGATGTTAGTGTGAAGACTGGTGCGCAAGTTGTGTATTCTAAATATGCTGGTACTGAGGTAGAATTCAATGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTCGGTATCCTTGAAACCGATGACATCAAGGAACTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCTGAAGCCGAGGAAAAAACTGCTGGTGGTTTGTTACTTACTGAAGCAACCAAGGAGAAGCCTTCTATTGGAACAGTGATAGCAGTTGGTCCAGGGCAATTGGACGATGAAGGCAACAGAAAACCATTGTCCGTGACTCCGGGGAACACAGTATTGTACTCCAAATATGCTGGAAATGACTTCAAGGGCAAAGATGGTGACTATATTACCTTGAGGGTCTCAGATGTCATTGCTGTCCTCTCCTAG 750 0.4613 MASTQLTAIASSVPTTSFERLRPSTFQMGRVRIGNLPQRSFRGLVVKAATVVAPKYTAIKPLGDRVLIKVKEAEEKTDGGILLPSTAQTKPQGGEVVAVGEGKTVGKSKVDVSVKTGAQVVYSKYAGTEVEFNGTKHLIVKDDDIVGILETDDIKELKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGQLDDEGNRKPLSVTPGNTVLYSKYAGNDFKGKDGDYITLRVSDVIAVLS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0238 249 CDD cpn10 157 248 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 Gene3D GroES chaperonin 152 249 IPR037124 GO:0006457
Vra5g0238 249 Gene3D GroES chaperonin 51 151 IPR037124 GO:0006457
Vra5g0238 249 PANTHER GROES CHAPERONIN 1 249 - -
Vra5g0238 249 Pfam Chaperonin 10 Kd subunit 59 148 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 Pfam Chaperonin 10 Kd subunit 157 247 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 CDD cpn10 59 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 SUPERFAMILY GroES-like 57 150 IPR011032 -
Vra5g0238 249 PRINTS 10kDa chaperonin signature 59 74 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 PRINTS 10kDa chaperonin signature 81 102 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 PRINTS 10kDa chaperonin signature 115 127 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 PRINTS 10kDa chaperonin signature 136 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 Hamap Co-chaperonin GroES [groES]. 156 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 PIRSF Cpn21 1 249 IPR017416 GO:0006457|GO:0046914|GO:1901671
Vra5g0238 249 ProSitePatterns Chaperonins cpn10 signature. 157 181 IPR018369 GO:0005524|GO:0006457
Vra5g0238 249 SMART Cpn10_2 156 248 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 SMART Cpn10_2 58 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 Hamap Co-chaperonin GroES [groES]. 58 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra5g0238 249 ProSitePatterns Chaperonins cpn10 signature. 59 83 IPR018369 GO:0005524|GO:0006457
Vra5g0238 249 SUPERFAMILY GroES-like 155 248 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0238 Vra-Chr5 2131994 2134895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0238 1 249 Calmodulin-binding Proteins AT5G20720 73.518 2.46e-129 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0238 K04078 - gmx:100814751 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2642 7 46648540 46650840 Vra5g0238 5 2131994 2134895 PCT