Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0237 ATGAAGGCTCCTCCAAGTGGCTACTTGCCTAATTCCACCGAAGGAGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCATGTGCTGGACCATTGGTTTCCTTACCTCCTGTTGGAAGTCTTGTAGTTTACTTTCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCGTTCCCAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTTCACGCTGATCCTGAAACTGATGAGGTCTATGCGCAGATGACCCTTCAACCTGTTACTAAATATGACAAGGAAGCAATATTGGCATCTGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTACCTCGAAGAGCTGCAGAGAAAATATTCCCACTTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAGTACTTGGACATTTAGACATATTTATCGAGGACAGCCAAAGAGGCATCTATTGACTACGGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCCGGAGATTCAGTTCTTTTTATCAGGGATGAAAAACAACAACTTCTTTTAGGTATAAAAAGAGCTAACAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGGATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACTATTTTCTATAATCCAAGGGCCAGCCCCTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAAGCTCTCTACAATCAAGCTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGAGTCAGGGGTACGCAGACATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCAGATGGAAGCATTCTCAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCTCCTCCATTCTTTAGGCCGAAGTTTCCCAAGCAGCCCGGAATGCCAGATGATGATTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGAATGAAGGATGCTTCAAGTTCAATCTTCCCAGGTTTGAGTTTGGTGCAATGGATGAGCATGCAGCAAAATAATCAGTTCTCCACTGCCCAATCTGGATTTATGCCCCCATCCATGCTTTCATCCAATACACTGCATGGTAACCTTCCCACTGATGATCCATCCAAATTATTGAACTTCCAAGCTCCTGTCCTCTCTGCACCAAATCTACAATTTAACAAACCTAACATACCAAACCAAGTCAACCAATTGCAACAACCCCAAACATCGTGGCCTCCGCAGCATCAACAACAGCAGAAGGTGCAGTCATTGATGCCAACAACCTTAAACCCGCTCCAACAGCAGCAACAGAGGCAACAACAGCTGCCTGTACTGCAAAACCTGTCACAACCACAGCAACAACAGCCCCAAATGCCTCAACAGAGAGCACAACAGTCACAGCAACAGCAACAACAGTCATGTCAACAGACCATCATCAATAATGAGGCAGTTTCTTCTAACCAGATTCCAAATCAGTGTGTGCAGCAACCAGTGACATACTCCCAGCTTCAGCAACAGCAATTACTCTCAGGAAATATCCCACCCCAACAAAGTTTTCAATCACCAAATAAGAATGCATTGCTGATGACATCCTTACCCCAAGATTCTCAGTTTCAACAAATTGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAACAGACACAGTTGCAATCATCTCCATTACAGTTATTGCAACAAAGCATGTCACAGAGGACGCCACAGCAACCACAAATGACACAAATGTCCCAGCAAAACAGCTCAGAGCAACAACCACAGTTGCAGTTGCTACAGAAATTGCAGCAGCAACAACAACAACAACAACAGAAACAACAACAACTCCTTTCCACTTCTAGCCCCCTTTTGCAGTCTCAGCTTCTACAGCAACAACATACTCATCAACAAAACCAGCAATTACCGCAGCTGCCTCTATCACAGTGTCATCAGCCTCAACAGCTTGGCAATAATGCTTTCTCGATGGAGAAGCTTTTCAATGGCAACAACTACTCTTCTTCGGCTTTGATGCAAACACAACAGTTTCCTATGAACCAATCCCAAAATACACAGAAATCATTAACTAATACTAGAGCTCCTTCAACACTTACAGATGGAGATGCCCCATCATGCTCAACTTCACCGTCTACTAATAACTGCCAGATATCTCCTTCAAATCTGATTAAAAGAAATCAACAGTTACCAACCACATTAGGAGGACCTTCGGTAGTTGAACCTACAAATCATTTGATACAGGAGCTTCATAGAAAGTCTGAGATGCAGATCAAACACGAATTACCCTGTGTAAGAGGACCTGACCAGCTGAAGTGCAAAGGGACAATTGCTGATCAGATGGAAGCTTCTTCTGGAACATCTTACTCTATCGATCCTAATAATATCCACCAGAACTTCCCACTTCCCAGTTTCTGCATGGACGGTGATGTCCAATCGCACCCGAGAAATAATCTTCCATTTGCCTCTAATCTTGATGGATTAACACCTGACACTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGCTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTTTCCACTGCTGCCATTAGTTCACAGGCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCCAGTGACATTGCCATCAATGATCCTGGGGTTTTGAATAACGGCATGTGGGCTAGTCAAACTCAAAGAATGAGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGGTATGATGAACTCCGGCATGATTTGGCTAGGATGTTTGGAATTGAAGGGCAGCTAGAAGATCCTCAAAGGACAGAGTGGAAACTAGTCTACGTAGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGCTTAGATGGAGATTTAGGACATGTTCCAGTCCCCAATCAAGCTTGTAGTGGGACAGATAATGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCGTTTAACCGATAA 3357 0.4382 MKAPPSGYLPNSTEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVTKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPLLDFSMQPPAQEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQASLGMRFRMMFETEESGVRRHMGTITGISDLDPVRWKHSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDDSDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSTAQSGFMPPSMLSSNTLHGNLPTDDPSKLLNFQAPVLSAPNLQFNKPNIPNQVNQLQQPQTSWPPQHQQQQKVQSLMPTTLNPLQQQQQRQQQLPVLQNLSQPQQQQPQMPQQRAQQSQQQQQQSCQQTIINNEAVSSNQIPNQCVQQPVTYSQLQQQQLLSGNIPPQQSFQSPNKNALLMTSLPQDSQFQQIDQQASLLQRQQQQTQLQSSPLQLLQQSMSQRTPQQPQMTQMSQQNSSEQQPQLQLLQKLQQQQQQQQQKQQQLLSTSSPLLQSQLLQQQHTHQQNQQLPQLPLSQCHQPQQLGNNAFSMEKLFNGNNYSSSALMQTQQFPMNQSQNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPSNLIKRNQQLPTTLGGPSVVEPTNHLIQELHRKSEMQIKHELPCVRGPDQLKCKGTIADQMEASSGTSYSIDPNNIHQNFPLPSFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQAFGVPDMPFKPGCSSDIAINDPGVLNNGMWASQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0237 1118 MobiDBLite consensus disorder prediction 762 804 - -
Vra5g0237 1118 Gene3D - 123 227 IPR015300 -
Vra5g0237 1118 MobiDBLite consensus disorder prediction 431 455 - -
Vra5g0237 1118 MobiDBLite consensus disorder prediction 470 503 - -
Vra5g0237 1118 MobiDBLite consensus disorder prediction 528 550 - -
Vra5g0237 1118 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1106 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra5g0237 1118 Gene3D - 289 360 - -
Vra5g0237 1118 SUPERFAMILY CAD & PB1 domains 1004 1069 - -
Vra5g0237 1118 MobiDBLite consensus disorder prediction 640 678 - -
Vra5g0237 1118 CDD B3_DNA 125 217 IPR003340 GO:0003677
Vra5g0237 1118 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Vra5g0237 1118 MobiDBLite consensus disorder prediction 1096 1118 - -
Vra5g0237 1118 Coils Coil 674 698 - -
Vra5g0237 1118 Gene3D - 986 1080 - -
Vra5g0237 1118 Pfam AUX/IAA family 988 1077 IPR033389 -
Vra5g0237 1118 MobiDBLite consensus disorder prediction 431 451 - -
Vra5g0237 1118 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra5g0237 1118 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Vra5g0237 1118 SMART B3_2 126 228 IPR003340 GO:0003677
Vra5g0237 1118 ProSiteProfiles PB1 domain profile. 991 1084 IPR000270 GO:0005515
Vra5g0237 1118 PANTHER AUXIN RESPONSE FACTOR 19 1 1106 - -
Vra5g0237 1118 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0237 Vra-Chr5 2123290 2130589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0237 1 489 B3 DNA Binding Superfamily AT1G19220 82.413 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra5g0237 AUX_IAA 2.6e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0237 K14486 - gmx:100815277 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2643 7 46651114 46658235 Vra5g0237 5 2123290 2130589 PCT