Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0230 ATGGATAGCGGTGTAGGCTACAAATTGACAGGGATTAGGCAGATTGTGAGGTTAAAGGAAATGCTGCAGAAGTGGCAGAACGTGACTTTAGGGCAAAAAGCTTCGATTCCAAGCATTACTGATAAAGTGCCTAATAACGATGGAAGTGGATTGCCATTGATAAACAAAAGGGTAGTGAATGTTATGAACATTGAATCTGACACAGAAGACAGCTGCCAAAGTCCTGAACCGCTTCCACCACCTGATGTTCCAAAGGGATACTTGGCAGTGTATGTTGGACCTGAGCTTAGGAGGTTCATCATTCCCACCACTTATCTCAGCCACTCTCTCTTCAAAGTTTTGCTGGAAAAGGCTGCAGATGAATTTGGCTTTGATCACAGTGGAGGCCTCACCATTCCCTGCGAGACTGAGACCTTCAAGTACCTACTCAAGTGCATCGAGAATGAAAACAAAGACCAACTCAATCATAAATCTGCACAAGCCGAAAGCTCGGGAACTGTGGAAGAGTAA 510 0.4471 MDSGVGYKLTGIRQIVRLKEMLQKWQNVTLGQKASIPSITDKVPNNDGSGLPLINKRVVNVMNIESDTEDSCQSPEPLPPPDVPKGYLAVYVGPELRRFIIPTTYLSHSLFKVLLEKAADEFGFDHSGGLTIPCETETFKYLLKCIENENKDQLNHKSAQAESSGTVEE* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0230 169 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 158 IPR003676 GO:0009733
Vra5g0230 169 PANTHER SMALL AUXIN-UP RNA-RELATED 7 158 - -
Vra5g0230 169 Pfam Auxin responsive protein 78 146 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0230 Vra-Chr5 2022050 2023487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0230 1 152 Calmodulin-binding Proteins AT3G43120 66.447 4.61e-69 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0230 K14488 - gmx:100527570 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0230 5 2022050 2023487 Vra5g0230 5 2022050 2023487 ECH
Vra7g2652 7 46757489 46758879 Vra5g0230 5 2022050 2023487 PCT