Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0229 ATGACCAAAGGAGGAAAACTAACCAAGCTCAAGTCAGTGCTCAAGAAATGGAACTCCTTCAGCAGCAAACAGACCCAAGCCACCATCACCTCCGTAGCCAGCAACGGTGACTCCTCGTCGCTCCGCCCCGTGTACGTCGGGAAGACGCGGCGGCAGTACCTGGTGAGCGCAGAGGTTGTCGAACACCCGCTGTTCCGGGAGCTGGTGGACAGGTCCCGCGACAGCAGCTCGGAGGAGGAGGAGGACAGCATCAACGTGGCGTGCGAGGTCGTTCTCTTCGAACACTTGCTCTGGATGCTCCACAACGCCGATCCTCAACCTGAGTCGCTTGACGAACTCGCCGATTTTTACGCCTGCTGA 360 0.5861 MTKGGKLTKLKSVLKKWNSFSSKQTQATITSVASNGDSSSLRPVYVGKTRRQYLVSAEVVEHPLFRELVDRSRDSSSEEEEDSINVACEVVLFEHLLWMLHNADPQPESLDELADFYAC* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0229 119 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 4 119 IPR003676 GO:0009733
Vra5g0229 119 Pfam Auxin responsive protein 10 100 IPR003676 GO:0009733
Vra5g0229 119 PANTHER SMALL AUXIN-UP RNA-RELATED 4 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0229 Vra-Chr5 2012848 2013612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0229 2 100 Calmodulin-binding Proteins AT4G34750 29.808 5.83e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0229 - - gmx:100806227 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0229 5 2012848 2013612 Vra5g0229 5 2012848 2013612 ECH