Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0223 ATGTCCAATCCTCAAACCTCGTCACCGCCACCGCCGCTGCCGATCATGACTCCGCCGGCAACCCCTCTCAACCATGAAACGACGTCGCACAAGAAAAATCGCAGAACCACCGGAGTTCCCGTTCCCCTTCCTCACTCAGTGGAAGTGATTGACGTTGACGATTCCACTACCTCGGCCTTTTTCACGCCCATCTCCTTCCGAGGCACGATCAGGTCAAACGCTGTCTCCGTTGAGCAACGTGACGGTTTTTCCAAATCTGTCCACGTCATCGACCTTTCCGACACCGAGGACGACGATGATTTACGTATCCTCAACTTCACTCCCGCAAACACCTCCTTTGGCAAACGGAAAAGGTTCAGGGGAGAATCCTCCAACGCAGCCCCCTTCGACTGCGAAATCTGCGCTGAAACCAAAACATCCAAGGAAGCCTTCTTCATCAGCGGCTGCTGCCACTCGTACTGCAACCACTGCATCGCGCTCTATGTCGAATCGAAGCTCCAGGACAACGTGGTCAACATAGGCTGCCCTGTGCCGCGGTGCAGGGGATTATTGGAAGCCGAAGATTGCCGTTCGATTCTCGCGCCTGAGGTTTTGGATCGGTGGGGTAAAGCCCTGTGTGAGGCTGTGATTTCTGTGGAGGAGAAGTTCTATTGTCCTTTTCCAGATTGCTCTGTGCTATTGATTCGCGAGGAGAAGGATGAGGGTATCAGAGAATCGAATTGTCCTAACTGTGGGAGGCTGTTTTGTGCGCTGTGTAGGGTACCCTGGCACGAGGACATACCCTGTGAAGAGTTTCAGAAACTGAACGCCGATGAGAGGGGAAGAGAGGATTTGATGCTGAGGAACCTTGCCAAGCAAATGATGTGGAAGAGGTGCCCTACTTGTCGGATTTACGTCGCCAAAACCTCTGGCTGTATGTACATGAAATGCAGGTGTGGGAGTGCCTTCTGTTACAACTGTGGGGTTCCTAACTCATCTAACCTCCATTATTGCTCCTCCTGTAGAAGATAA 1011 0.5232 MSNPQTSSPPPPLPIMTPPATPLNHETTSHKKNRRTTGVPVPLPHSVEVIDVDDSTTSAFFTPISFRGTIRSNAVSVEQRDGFSKSVHVIDLSDTEDDDDLRILNFTPANTSFGKRKRFRGESSNAAPFDCEICAETKTSKEAFFISGCCHSYCNHCIALYVESKLQDNVVNIGCPVPRCRGLLEAEDCRSILAPEVLDRWGKALCEAVISVEEKFYCPFPDCSVLLIREEKDEGIRESNCPNCGRLFCALCRVPWHEDIPCEEFQKLNADERGREDLMLRNLAKQMMWKRCPTCRIYVAKTSGCMYMKCRCGSAFCYNCGVPNSSNLHYCSSCRR* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0223 336 SUPERFAMILY RING/U-box 128 208 - -
Vra5g0223 336 ProSiteProfiles TRIAD supradomain profile. 127 336 IPR044066 -
Vra5g0223 336 SMART ibrneu5 272 334 IPR002867 -
Vra5g0223 336 SMART ibrneu5 199 262 IPR002867 -
Vra5g0223 336 MobiDBLite consensus disorder prediction 1 42 - -
Vra5g0223 336 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 70 335 - -
Vra5g0223 336 Pfam IBR domain, a half RING-finger domain 207 262 IPR002867 -
Vra5g0223 336 ProSitePatterns Zinc finger RING-type signature. 149 158 IPR017907 -
Vra5g0223 336 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 70 335 IPR031127 GO:0004842|GO:0016567
Vra5g0223 336 ProSiteProfiles Zinc finger RING-type profile. 131 179 IPR001841 -
Vra5g0223 336 MobiDBLite consensus disorder prediction 1 19 - -
Vra5g0223 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 212 IPR013083 -
Vra5g0223 336 Gene3D - 264 336 - -
Vra5g0223 336 SUPERFAMILY RING/U-box 205 267 - -
Vra5g0223 336 SUPERFAMILY RING/U-box 273 335 - -
Vra5g0223 336 Gene3D - 216 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0223 Vra-Chr5 1930103 1932419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0223 131 323 C3H Transcription Factor Family AT2G19610 31.373 1.19e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0223 K11975 - gmx:100803898 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0223 5 1930103 1932419 Vra5g0223 5 1930103 1932419 ECH