Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0222 ATGATGTTCCATTCTCAGGGTGTGTCAAGACATTGTAGTCTCCTTGCTGTTCTTAGTGGTAAATCTCGTGACATTAAACAGAAGCAGAAGCAGAGTGCTGCTTCTGAGGATCATCCTCCTTATCCCTTTCCAGAGCTTGCTTCTTCTGGCAGTCTTGAGGTCAAGTTGTTGATAAAACCTAATACCGATGAACTCGGTCGGGCTCTTGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCAGCTGCTGGAAGATAGGGGAGAAATTGGGACCCTTGTATGGGAGGATTTTGACCTGTCTTCCCCAGAAGCATTGTGTGGATTATTTGGTTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTAAGGGAGAGAAATTGGCGGAGGCACTCCGTAATAAGGGAGTTCCGTACACTATCTATTGGAAAAATGAATTTTCAAAGTATGCAGCTTCACATTTTCGTCATTCTTTTTTCTCTGTAGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTGGCATCGTTTAGACTATACTGTATACAAAACAATGTCTTACCTTCTAACAGCCATAANGGTGCNGGTAAGTTTGGNCCACAAATTTTTGGNGTTCCTCNCAACATTGATACCAGTCAAAGTGTAGCAGACATGAAGGAAGAGGAAGAGGAAAGTTCACCTGAGACTATATCTGCTGTAAAGATATATGATGATGATGTGAACATGAGATTTCTTGTTTGCGGAGTTCCCTGCACATTGGATGCTTGCTTGTTGGGATCACTAGAGGATGGACTCAATGCTCTTCTATTTACAGAAATACGTGGATGCAAACTTCACAACAGGACTAGTGCTCCACCACCACCTCTGCAGGCAGGAACATTCTCACGCGGTGTAGTGACTATGCGTTGTGATATATCCACATGTAGTACTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAGAAAGAGCTCATTGAGAAGAGTCAACTTGTTCAGGCATTTCCTAATCATGAACAAAGTAAATCACCTTCCTTGGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTGTGCGAGTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCATCCAATGTGTCATACCGCAGCCTTGTTATGTTGGGAATTGCTAGCATTCAGGGATTGCCAGTTGCATCTTTCAATAAAGATGATGCTGAGCGCCTCCTTTTTTTTTGTGCTAAGCAGGAGAAAGATAACTGTTGTAACGAGCAAGTTTTCTCTGCGATTCCAAGTTGGCTGAAGCCTCCACCGCCCAGTCGAAAAAGATCTGAACCATGCTCTAGTTCAAAGTCTATCAATCCTAGTGGCCGGGGAATTGAAGATATTGGTAGTCATAGACAGAAATTAAATCTTGCTGCTATGAGGCCAATTCCTCAATCTCATAGACACAAGATTCTCCCTTTTTCTGGATTGTCTGGGGGTGCCAGATATGATGGAGATCATGGAAAGTCAAACCAGCCGCTTGCTCCTATTAAGCATAATGTTTCAGGCCCTTCTTCGGTTACAAACAGGAAATCTGTGTCGAACTCATTTCAAGCTAACCAGATTATTTCTTTGAACCCACTACCTATGAAAAAGCACGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGACTTCCTGAGGGATGTAATGCAGTTTTTGATCCTTCGGGGGCATAATCGTTTAATTCCGCCAGGTGGACTTGCCGAGTTCCCTGATGCCATTTTGAATGCAAAACGCCTTGACCTGTTCAACTTGTACAGGGAGGTGGTTTCAAGAGGAGGGTTTCATGTTGGAAATGGTATCAACTGGAAAGGGCAAGTTTTCTCAAAGATGCGGAATCACACTTTGACAAATAGAATGACTGGGGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTCTTAGAATATGAATTAGCTCATGACGATGTAGACGGAGAGTGCTGCTTGATGTGTCACAGTAGTGCAGCAGGTGATTGGGTGAACTGTGGCGTATGTGGTGAGTGGGCTCATTTTGGCTGTGATCGGCGGCAGGGTCTAGGAGCATTTAAGGACTATGCAAAAACCGATGGACTGGAATACGTTTGTCCTCGCTGCAGTGCATTAAAGTTCAGTAAAAAATCTCAAAAAACTGCAAATGGTTATTGA 2262 0.435 MMFHSQGVSRHCSLLAVLSGKSRDIKQKQKQSAASEDHPPYPFPELASSGSLEVKLLIKPNTDELGRALEQLQPDFVYLQGQLLEDRGEIGTLVWEDFDLSSPEALCGLFGSKLPNTVYLETPKGEKLAEALRNKGVPYTIYWKNEFSKYAASHFRHSFFSVAQSTSSHTWDAFQLALASFRLYCIQNNVLPSNSHXGAGKFGPQIFGVPXNIDTSQSVADMKEEEEESSPETISAVKIYDDDVNMRFLVCGVPCTLDACLLGSLEDGLNALLFTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSTAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQAFPNHEQSKSPSLEPRRSASVACGSSVFEVCVRVPAWASQVLRQLASNVSYRSLVMLGIASIQGLPVASFNKDDAERLLFFCAKQEKDNCCNEQVFSAIPSWLKPPPPSRKRSEPCSSSKSINPSGRGIEDIGSHRQKLNLAAMRPIPQSHRHKILPFSGLSGGARYDGDHGKSNQPLAPIKHNVSGPSSVTNRKSVSNSFQANQIISLNPLPMKKHGCDRAPIRVCSEEDFLRDVMQFLILRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLMCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSALKFSKKSQKTANGY* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0222 753 ProSiteProfiles ARID domain profile. 576 680 IPR001606 GO:0003677
Vra5g0222 753 SUPERFAMILY ARID-like 577 691 IPR036431 GO:0003677
Vra5g0222 753 SMART ARID_2 573 676 - -
Vra5g0222 753 Gene3D - 574 679 IPR036431 GO:0003677
Vra5g0222 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 743 IPR013083 -
Vra5g0222 753 MobiDBLite consensus disorder prediction 529 545 - -
Vra5g0222 753 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 753 IPR042293 -
Vra5g0222 753 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 753 - -
Vra5g0222 753 CDD PHD_ARID4_like 686 737 - -
Vra5g0222 753 MobiDBLite consensus disorder prediction 26 47 - -
Vra5g0222 753 MobiDBLite consensus disorder prediction 452 485 - -
Vra5g0222 753 SUPERFAMILY FYVE/PHD zinc finger 679 742 IPR011011 -
Vra5g0222 753 MobiDBLite consensus disorder prediction 516 545 - -
Vra5g0222 753 CDD ARID 578 676 - -
Vra5g0222 753 Pfam ARID/BRIGHT DNA binding domain 579 676 IPR001606 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0222 2 752 ARID Transcription Factor Family AT3G43240 65.252 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vra5g0222 ARID 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0222 - - gmx:100808357 1398.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0222 5 1917379 1924861 Vra5g0222 5 1917379 1924861 ECH