Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0221 ATGGCTTCTTCCAATTCCGTTTCTTCTCTCAACGTCGTCGGATACACAAACACTACTTCTCCACCAACCAACCACCTATCATCCCCATCACACATCACTCTCCTCGCGCTAACGCTTCTCATCCTCGCCGCTACCGTTTCGCTAGCTGTTTATTTCCTTCTCCGTTACCGCAACCGTTTCCTCCGTCGTATCTCTCCCTCATCCACTTCATTATTCTCGTCCGGGAATCCGATATCGTCGGACAACGCTTCGCCTTCCATCGCCGGCTCTCTACCGGCGTTCTCCTTCTCCTCCGTGACGCGACGCTCCGCCGCATCCGGTGGCGGCGAAGACTGCGCCGTGTGCTTATCGAAGTTCGAGCAGCACGACCTTCTCCGCTTGCTACCTCTATGCTGCCACGCGTTCCACGCTGAATGCATCGACACGTGGCTCCAATCGAACCTCACGTGTCCGCTCTGCCGATCCGCCGTCAGCGCGTCGGAGTCTGACCTCGCCAAGGTCTTCCGCTCGTCGTCCGTCGCCGGCGGCGAGAGCTTTCGGCTTGAGATAGGGAACATCAGCAGCAGCGACCGCCGTGGAGCGGCGGCCGGCGAGGAAACGCGCGGGAGGTCCTATTCCGTTGGTGCGTTCGAGTATTTAATCGACGAGGAGGCTGTGGCTGAGGTTGAGGTTGCGTTCGGTTATGCTATCCAGAGAAGCGTTTCTGGCGAGAAACATGACGGCGCTACGGTGGAGGCTGCGGCAGATTCTCTGCCGAGCTTGGCTGGTGAGGTAGGGCGTGGAGGAAGTAGCAATAGTAGTGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAGTACGATGTCGTTTCGAAATTCTGGAATGTTCTTCACTGGGAGTAGTCGCCGAAGCGACGTCGTTCAGGGTGGAGATTACGATGCGGAAGCCAACCGTTTGGGGGATGAAATTGGTGAAATGTTTCGATGGCTCTCGTCGGTTTGA 981 0.5678 MASSNSVSSLNVVGYTNTTSPPTNHLSSPSHITLLALTLLILAATVSLAVYFLLRYRNRFLRRISPSSTSLFSSGNPISSDNASPSIAGSLPAFSFSSVTRRSAASGGGEDCAVCLSKFEQHDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSAVSASESDLAKVFRSSSVAGGESFRLEIGNISSSDRRGAAAGEETRGRSYSVGAFEYLIDEEAVAEVEVAFGYAIQRSVSGEKHDGATVEAAADSLPSLAGEVGRGGSSNSSGWLKDYVDRLSSTMSFRNSGMFFTGSSRRSDVVQGGDYDAEANRLGDEIGEMFRWLSSV* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0221 326 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Vra5g0221 326 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 314 - -
Vra5g0221 326 SUPERFAMILY RING/U-box 108 159 - -
Vra5g0221 326 Pfam Ring finger domain 111 154 IPR001841 -
Vra5g0221 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 160 IPR013083 -
Vra5g0221 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 314 - -
Vra5g0221 326 SMART ring_2 112 153 IPR001841 -
Vra5g0221 326 CDD RING-H2_PA-TM-RING 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0221 Vra-Chr5 1911516 1912865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0221 30 154 C3H Transcription Factor Family AT2G34990 37.984 4.47e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0221 K10663 - gmx:100804962 417.157