Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0217 ATGGATAAAATTAGCCATTGTTGTCCTTTTCTTCATCTGAGAGTGAGAACACAGCAATTTGTGGTAACCCTTTCAGTATTAGGCAGTGCACTGTCGTGGATCACCACTACTGATGCTCTCAATGAGTGCAGTCTTACTAGATATCCCGATCTATGTGCTCAAACCTTGATGCAATTTGGTTCATCCAATCAAAGTGTTCATCATAACATTTTGGTTCTTGTCAACAAAACCATTTTAGAAACTAACTTGCCAAGTTCATATTTTGCTGATTACAAGACTGATGATGAAGATGCAGCCCATTCTGTCGTTGCAGATTACTGTGAAGAGCTTATTGGCATGTCATTGAAAAGGTTAGATCAATCCCTGAGAGCACTGAAATCCCCTACAAGAAACAACAATGACATTCAAACATGGCTAAGTGCTTCCATAACTTTCCAACAAACTTGTAAAGACTATGCAGATGCACACACCACAACTTCTGCAGGAGGCCTTATGCAAAGAATGTCAGACAAAATGCACTATCTTTCACAACTGGGAAGCAACTCATTAGCATTTGTTAACCATGTGAGCAAAAAAGGTGAGACTAACAAAGAGGAAGATGAATTTCCCAAGTGGGTATCAGCCAAAGGACGTAAGCTGCTTCAAGGAGGCAGCATAAAAGCAAATGCCATAGTTGCACAAGATGGTTCAGGAGATTACAAGACAGTTTCTGAAGCCATTAAGGCAGCTTCAGGGAAAAGTTTTGTGATTTATGTTAAGGAAGGGACTTATAAAGAGAAGATTCGCACCAACAAGGATGGTATCACCTTAGTTGGAGATGGAAAATACTCTACTCTTATTGTTGGAGATGACAGTGTTGCCCAGGGTTCTTCCTTAACTGACTCAGCCACGTTTACAATATACGGCGATGGCTTTATCGCACGTGACATCGGATTCCAGAACAACGCTGGCCCAGGAGGCGAACAAGCGGTGGCTCTCAACATAGCCTCCGACCATGCCGTCCTCTACCGGTGCAGTATAGCAGGGTACCAAGACACCCTCTACGCCCTCGCCCTCCGCCAGTTCTACGCAGAATGTGACATCTACGGCACGATCGACTTCATCTTCGGCAACGCCGCCGCCGTCTTCCAGCGCTGCAACCTCCTCCTCCGCCACCCTCGCGGCTCCAGCTACAACGCCATTCTGGCCAACGGCCGAACTGACCCCGGGCAGAACACTGGGTTCTCTGTTCACAAGAGTAGTATATCGCCGACTTCGGATTTTAAGCAGTCGCACAGTTCGTTTCTGGGGAGACCCTGGAAGGAGTATTCGAGATCGGTGGTGATGGAGAGTAGAATCGACGAAGTGATTGCGGCGAAAGGGTGGGTGGCGTGGCCTGGGTATGGAAGCTCCGTGTTGAAGAGTTTGTATTTCGCGGAGTACGGCAATGAAGGAGGTGGTGCTGGAACCGCAGGAAGGGTGCAGTGGCAGGGTTTTCATGTTCTTAAGGCTGAAGATGCGTCCAAATTCACTGTTGCTAATTTTATTTCTGGAAACTCGTGGATTCCATCCACTGGAGTTAATTTCATTTCAGGGCTTAATTAA 1584 0.464 MDKISHCCPFLHLRVRTQQFVVTLSVLGSALSWITTTDALNECSLTRYPDLCAQTLMQFGSSNQSVHHNILVLVNKTILETNLPSSYFADYKTDDEDAAHSVVADYCEELIGMSLKRLDQSLRALKSPTRNNNDIQTWLSASITFQQTCKDYADAHTTTSAGGLMQRMSDKMHYLSQLGSNSLAFVNHVSKKGETNKEEDEFPKWVSAKGRKLLQGGSIKANAIVAQDGSGDYKTVSEAIKAASGKSFVIYVKEGTYKEKIRTNKDGITLVGDGKYSTLIVGDDSVAQGSSLTDSATFTIYGDGFIARDIGFQNNAGPGGEQAVALNIASDHAVLYRCSIAGYQDTLYALALRQFYAECDIYGTIDFIFGNAAAVFQRCNLLLRHPRGSSYNAILANGRTDPGQNTGFSVHKSSISPTSDFKQSHSSFLGRPWKEYSRSVVMESRIDEVIAAKGWVAWPGYGSSVLKSLYFAEYGNEGGGAGTAGRVQWQGFHVLKAEDASKFTVANFISGNSWIPSTGVNFISGLN* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0217 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 191 IPR035513 -
Vra5g0217 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 190 IPR035513 -
Vra5g0217 527 Pfam Pectinesterase 222 512 IPR000070 GO:0030599|GO:0042545
Vra5g0217 527 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 27 525 - -
Vra5g0217 527 Gene3D - 216 526 IPR012334 -
Vra5g0217 527 SUPERFAMILY Pectin lyase-like 220 525 IPR011050 -
Vra5g0217 527 Pfam Plant invertase/pectin methylesterase inhibitor 43 184 IPR006501 GO:0004857
Vra5g0217 527 PANTHER PECTINESTERASE 27 525 - -
Vra5g0217 527 SMART PMEI_2 35 185 IPR006501 GO:0004857
Vra5g0217 527 TIGRFAM PME_inhib: pectinesterase inhibitor domain 23 188 IPR006501 GO:0004857
Vra5g0217 527 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Vra5g0217 527 CDD PMEI-like_3 43 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0217 Vra-Chr5 1870514 1873065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0217 10 526 Carbohydrate Esterase AT2G45220 41.255 1.06e-123 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0217 K01051 - gmx:100795439 761.911