Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0216 ATGGCCTTCCAGGATTTCGAGCTCATCACGGAGCGCCGAAGAAACGAGAACAGACAAAGGCTCAGGAAGAAGATCATCATCAGCGTGGTTTCCGCCGTTCTTCTTGCATGCGTGGTTGGTGCCGCCACCTTCGTGGTTGTTCAGAGAACCGGTTCTTCCACAAAAAACGCAACCCCAATACAAGAAGCCTCCGCGAGGCCACACGTGGACCAAAGTTCGAGGCTGGTAGAAATGATCTGCGGCTCCGCGGAGTACAAAGACAAATGCAAGAAAACCCTCGGTGAGGCTCTGGAGAAGGACCCCAAGCTGACGGAGCCCAAGGACCTGCTCAAGGTGTCCTTTATCCTTGCCGAGAATGAGATGAACAAAGCCTTCAACGAAACCACGAAAATGGAGTTCGCGTCCCCAGAGGAGAAAGGCGCATACAGTGATTGCAAGGAGATGTTCGATGACGCCAAGGATGAGCTGAGACGTTCGATCGACGAGGTCGGAGAAAACGATGCCAAAGTACTCTCCACGAAAGCTGCGGAAATCAACAACTGGCTCAGCGCTGTTATGAACTACGAGCAAACCTGCATCGACGGGATTCCCGAAGGAAAGATGAGGGAAGACTTCACGAAGCTATTCGCCGAGTCAAGGGAGCTTGTGAGCAATGCCCTTGCCGTTATGTCGCAGTTTGCTTCGTTCTTTTCAATCTTCCAAGGAGCTGGGAACATTCACGTTCCATGGGAAACCACCGATAATGATGCACCTGCCCCTGCTTCTGCTTCCGGTTCTTCTGCTTCTTCTGCTTCTTCGGCTTCTGCTCCTGGTGTTGCCCCTGCAGGTTCTGCTCCTGCTCCTAGCTCCGCTCCTGGTGCGGCTCCGGTCCCAATGCCTTCCTCGGATGATCCACTTCCAACATTGCCTATCCCTACTTGGGCTGGCCCTTCTGAGTTCAAAGGATCAGATGAGAAACCCACACCCAATGTCACCGTCGCACAAGATGGAAGCGGAGACTTCAAAACCATCTCTGAAGCCTTGGCTGCCATCCAGACACCATACGAGGGAAGGTACGTGGTTTATGTTAAAGCTGGAATTTACGATGAGACCGTGACAGTGACAAGGAAATTGGTAAACCTAACCATGTATGGTGACGGAGGTGACAAGAGTATCATCACTGGCAACAAAAATTTCGTTGATGGAGTCAGAACTTTCCAAACTGCATCATTCGTGGTACTGGGAGATGGATTCTTGGGCAGAGAGATGCAATTCAGAAACACTGCAGGAGCAGAGAAGCATCAAGCAGTGGCTGCAAGAGTGCAAGCCGATCAAGCAATGTTTTTCAACTGTGTCTTTGACGGTTACCAAGACACACTCTACGCCCAAACCCACAGACAGTTCTACCGCGACTGCACCATCACCGGCACCATCGACTTCATCTTCGGTGACGCATCAGCAGTGTTTCAAAACTGTACAATATTGGTGAAAAAGCCCCTTGAAAACCAGCAGAACATTGTGACTGCACAAGGGAGACTGGACAGGCAAGAAAACACTGGGTTCGTTCTGCAGAAGTGTGTGATCAAAGCTGCTGATGACTTGGTCCCGTTGAAGGGGACGGTGAAGAACTACCTCGGAAGGCCCTGGAAGGAGTACTCAAGAACCATCATCATGGAGACTCAAATAGAGGACTTGATTCACCCAGATGGGTGGCTTCCATGGGAAGGGGACTTTGCACTGAAAACCTTGTACTATGGTGAGTTCAACAACAATGGAGTAGGCGCCAGCACCTCCGCTAGGGTGAACTGGCCTAACCGCAAAGACATTGATAGGGATGAGGCTAACAGGTACACGGTTGAGGCTTTTTTGCAAGGGTCATGGATCAATGGAACAGGAGTCCCAGCTCAAATGGGCTTGTACTCTTAA 1905 0.5087 MAFQDFELITERRRNENRQRLRKKIIISVVSAVLLACVVGAATFVVVQRTGSSTKNATPIQEASARPHVDQSSRLVEMICGSAEYKDKCKKTLGEALEKDPKLTEPKDLLKVSFILAENEMNKAFNETTKMEFASPEEKGAYSDCKEMFDDAKDELRRSIDEVGENDAKVLSTKAAEINNWLSAVMNYEQTCIDGIPEGKMREDFTKLFAESRELVSNALAVMSQFASFFSIFQGAGNIHVPWETTDNDAPAPASASGSSASSASSASAPGVAPAGSAPAPSSAPGAAPVPMPSSDDPLPTLPIPTWAGPSEFKGSDEKPTPNVTVAQDGSGDFKTISEALAAIQTPYEGRYVVYVKAGIYDETVTVTRKLVNLTMYGDGGDKSIITGNKNFVDGVRTFQTASFVVLGDGFLGREMQFRNTAGAEKHQAVAARVQADQAMFFNCVFDGYQDTLYAQTHRQFYRDCTITGTIDFIFGDASAVFQNCTILVKKPLENQQNIVTAQGRLDRQENTGFVLQKCVIKAADDLVPLKGTVKNYLGRPWKEYSRTIIMETQIEDLIHPDGWLPWEGDFALKTLYYGEFNNNGVGASTSARVNWPNRKDIDRDEANRYTVEAFLQGSWINGTGVPAQMGLYS* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0216 634 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 225 IPR006501 GO:0004857
Vra5g0216 634 SUPERFAMILY Pectin lyase-like 321 627 IPR011050 -
Vra5g0216 634 Pfam Pectinesterase 323 618 IPR000070 GO:0030599|GO:0042545
Vra5g0216 634 Pfam Plant invertase/pectin methylesterase inhibitor 75 221 IPR006501 GO:0004857
Vra5g0216 634 SMART PMEI_2 71 222 IPR006501 GO:0004857
Vra5g0216 634 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 226 IPR035513 -
Vra5g0216 634 MobiDBLite consensus disorder prediction 244 330 - -
Vra5g0216 634 ProSitePatterns Pectinesterase signature 2. 467 476 IPR033131 -
Vra5g0216 634 CDD PMEI-like_3 79 228 - -
Vra5g0216 634 MobiDBLite consensus disorder prediction 250 270 - -
Vra5g0216 634 Gene3D - 318 632 IPR012334 -
Vra5g0216 634 PANTHER PECTINESTERASE 14 632 - -
Vra5g0216 634 MobiDBLite consensus disorder prediction 284 305 - -
Vra5g0216 634 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 226 IPR035513 -
Vra5g0216 634 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0216 Vra-Chr5 1851393 1853657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0216 1 633 Carbohydrate Esterase AT4G33230 40.030 7.67e-171 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0216 - - gmx:100807628 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2667 7 46931350 46933981 Vra5g0216 5 1851393 1853657 PCT