Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0215 ATGGCTCATTCATCTCATAAACTCTTCTTTCTTCTCCTTGCAATCTTCTACTCACACACTTCTGCTGTCAACTCCTACAATGCTTCCACAACACCTCAGTCCAATCTCTCTTCCTTAAGATCTTTCTGCATAACCACCCCATATCCAGAAGTTTGTTTCAATTCATTATCCATCTCAATAAACATAAGTCCTAACATTAACAGCTACCTCGTTCAGTCACTCCAAGTAGCAATATCTGAAACCATAAAGCTCTGCAATATCTTCCACAATGTTGGACACTCAAACATCATAGAGAAGCAAAGAGGAGCACTTCAGGACTGCCGAGAACTCCACCAATCAACATTGGCTTCTTTGAAAAGATCACTATCATGGATCCGTTCCTCCAACTCCATGAGCATAGTTGATGCAAGAGCCTACCTCAGTGCAGCTGTCACCAACAAGAATACATGCTTGGAAGGCCTAGATTCTGCTTCTGGCACCATGAAGCCAGCTCTGGTGAAATCTGTGATCAACACTTACAAGCATGTCAGTAACTCTCTTTCTNTGCTACNGAAGNCTGAGACGGGGACTCCCGGAGACCAGAAGAATGACCAGCNTTTGATGAANGCTCCAAAGTGGTTATCAAGCCGAAATCAAGGAACTTTTCAAGATATGGAAGAGTATAACCCAAATGAAGTGCTAGTTGTGTCTGCAGATGGAAGTGGGAACTTTACCACCATCACTGAAGCCATCAACTTTGCTCCAAGTAACAGCACGGATAAGACAGTGATCTATGTCAAAAAAGGGACTTATGAGGAAAACGTGGAAATCCCATGGTATAAGACCCACATTGTGATGGTAGGCGATGGAAGTGATGTCACTGTCATAACTGGTAACAGAAGCTTTGCCTGGACCACTTTCAGATCTGCAACTCTAGCGGTTTCTGGAAAAGGTTTTCTTGCTCGTGATATTGCAATTGAGAACAGTGCAGGACCAAAGCACCAAGCAGTGGCCTTGAGGGTAAATGCAGACTTAACTGCTTTTTACAGGTGTGCAATTAATGGCTACCAAGACACTTTATATGTTCACTCCTTTAGACAATTTTACAGAGAGTGTGACATTTCTGGGACCATAGATTTCATATTTGGAAATGCAGCAGTGGTTCTACAAGATTGTAACATCATATCCAGAAAGCCCTTGCCTGGGCAATTCACTGTTATCACCGCACAATCCAGAGATAGCCCTGATGTGGACACAGGCATCTCAATCCAGAACTGCAAAATCATAGCCAGCCCTGATCTGTATTCCAACTCTAGCAGTTTCAAGAGCTACCTTGGGAGGCCATGGAAGAACTATTCTCGCACCGTTTACCTTGAGTCCTTCATTGATGCCTTCATTGACCCAAAGGGTTGGATAGAATGGAATAATGATAACAAAAGATCGGACACATTGTACTATGGAGAATACGACAACTATGGACCCGGTTCCACCACAGATAGTCGTGTTGAATGGTTAGGCTACCATTTGATGGATTATGATGATGCATATAGTTTCACAGTTTCGCAGTTCATCAATGAAGATGAGTGGCTTGATACTACTTTGGTACCTTATGATAACGGGATTTGA 1605 0.428 MAHSSHKLFFLLLAIFYSHTSAVNSYNASTTPQSNLSSLRSFCITTPYPEVCFNSLSISINISPNINSYLVQSLQVAISETIKLCNIFHNVGHSNIIEKQRGALQDCRELHQSTLASLKRSLSWIRSSNSMSIVDARAYLSAAVTNKNTCLEGLDSASGTMKPALVKSVINTYKHVSNSLSXLXKXETGTPGDQKNDQXLMXAPKWLSSRNQGTFQDMEEYNPNEVLVVSADGSGNFTTITEAINFAPSNSTDKTVIYVKKGTYEENVEIPWYKTHIVMVGDGSDVTVITGNRSFAWTTFRSATLAVSGKGFLARDIAIENSAGPKHQAVALRVNADLTAFYRCAINGYQDTLYVHSFRQFYRECDISGTIDFIFGNAAVVLQDCNIISRKPLPGQFTVITAQSRDSPDVDTGISIQNCKIIASPDLYSNSSSFKSYLGRPWKNYSRTVYLESFIDAFIDPKGWIEWNNDNKRSDTLYYGEYDNYGPGSTTDSRVEWLGYHLMDYDDAYSFTVSQFINEDEWLDTTLVPYDNGI* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0215 534 PANTHER PECTINESTERASE 7 533 - -
Vra5g0215 534 Pfam Plant invertase/pectin methylesterase inhibitor 38 181 IPR006501 GO:0004857
Vra5g0215 534 SMART PMEI_2 34 182 IPR006501 GO:0004857
Vra5g0215 534 Pfam Pectinesterase 227 519 IPR000070 GO:0030599|GO:0042545
Vra5g0215 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 181 IPR006501 GO:0004857
Vra5g0215 534 Gene3D - 221 534 IPR012334 -
Vra5g0215 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 181 IPR035513 -
Vra5g0215 534 CDD PMEI-like_3 41 181 - -
Vra5g0215 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 185 IPR035513 -
Vra5g0215 534 SUPERFAMILY Pectin lyase-like 224 532 IPR011050 -
Vra5g0215 534 PANTHER PECTINESTERASE 7 533 - -
Vra5g0215 534 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0215 Vra-Chr5 1843629 1845706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0215 25 534 Carbohydrate Esterase AT2G26440 61.027 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0215 - - gmx:100776969 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2668 7 46934121 46936408 Vra5g0215 5 1843629 1845706 PCT