Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0214 ATGGCTCATTCACCGCATAAACTCTTTTTTCTTCTCCTTGCAATCTTCTACTCACACACTTCTGCTGTTAACTCCTACAATGCTTCCACAACACTTCAATCCAATCTCTCTTCCTTAAGATCTTTCTGCACAAACACCCCATATCCAGAAGTTTGTTTCAATTCATTGAAGCTATCCATCTCAATAAACATAAGTCCAAACATTATCAGCTACCTCCTTCAGTCACTCCAAGTAGCAATATCTGAAACCACAAAGCTCTCCAATATCTTCCACAATGTCGGAAACTCAAACATCATAGAGAAGCAAAGAGGAGCAGTTCAGGACTGCCGAGAACTCCACCAATCCACATTGGCTTCTTTGAAAAGATCACTATCAGGGATCCGTTCCTCCAACTCCAAGAGCATAGTTGATGCAAGAGCCTACCTCAGTGCAGCTGTCACCAACAAGAACACATGCTTGGAAGGCCTAGATTCTGCTTCTGGCACCATGAAGCCAGCTCTGGTGAAATCTGTGATCAACACTTACAAGCATGTCAGTAACTCTCTTTCTNTGCTACNGAAGNCTGAGACGGGGACTCCCGGNGACCAGAAGAATGACCAGCNTTTGATGAANGCTCCAAAGTGGTTATCAAGCCGAAANCAAGGAACTTTTCAAGATATGGAAGAGTATAACCCAAATGAAGTGCTAGTTGTGTCTGCAGATGGAAGTGGGAACTTTACCACCATCACTGAAGCCATCAATTTTGCTCCAAGTAACAGCATGGAAAAGATAGTGATCTATGTCAAAGAAGGGATTTATGAGGAAAACGTGGAAATCCCAAGCTATAAGACCAACATTGTGATACAAGGCGATGGAAGTGATGTCACTGTCATAACTGGTAACAGAAGCGTTGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTTTCTGGTGATGGTTTTCTTGCTCGTGATATTGCAATTGAGAACAGTGCAGGGGCAGAGAAGCACCAAGCAGTGGCCTTGAGGGTAAATGCAGACTTAACTGCTTTCTACAGGTGTGCAATTAATGGCTACCAAGACACTTTATATGTTCACTCCTTTAGACAATTTTACAGAGAGTGTGACATTTCTGGGACCGTAGATTTCATATTTGGAAATGCAGCAGTGATTTTACAAGATTGTAACATTATATCCAGAAAGCCCTTGCCTGGGCAATTCACTGTTATCACCGCACAATCCAGAGATAGCCCTGATGAGGACACAGGCATCTCAATCCAGAACTGCTCAGTCATAGCTACCCCTGATCTGTATTCCAACTCTTGCAGTTTCAAGAGCTACCTTGGGAGGCCATGGAGGGTCTATTCTCGCACTGTTTACCTGGAGTCTTACATTGATAACTTCATTGATCCAAAGGGTTGGATAAAATGGAATAATGATAACAAAAGATCGGACACACTGTACTATGGAGAATACGACAACTATGGACCCGGTTCCAACACAGATAGTCGTGTTGAATGGTTAGGCTACCATTTGATGGATTATGGTGATGCATATAATTTCACAGTTTCGCAGTTCATCAATGCAGATGATTGGCTTGATACTACTTTGGTACCTTATGATAACGGGATTTGA 1620 0.4272 MAHSPHKLFFLLLAIFYSHTSAVNSYNASTTLQSNLSSLRSFCTNTPYPEVCFNSLKLSISINISPNIISYLLQSLQVAISETTKLSNIFHNVGNSNIIEKQRGAVQDCRELHQSTLASLKRSLSGIRSSNSKSIVDARAYLSAAVTNKNTCLEGLDSASGTMKPALVKSVINTYKHVSNSLSXLXKXETGTPGDQKNDQXLMXAPKWLSSRXQGTFQDMEEYNPNEVLVVSADGSGNFTTITEAINFAPSNSMEKIVIYVKEGIYEENVEIPSYKTNIVIQGDGSDVTVITGNRSVGDGWTTFRSATLAVSGDGFLARDIAIENSAGAEKHQAVALRVNADLTAFYRCAINGYQDTLYVHSFRQFYRECDISGTVDFIFGNAAVILQDCNIISRKPLPGQFTVITAQSRDSPDEDTGISIQNCSVIATPDLYSNSCSFKSYLGRPWRVYSRTVYLESYIDNFIDPKGWIKWNNDNKRSDTLYYGEYDNYGPGSNTDSRVEWLGYHLMDYGDAYNFTVSQFINADDWLDTTLVPYDNGI* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0214 539 Pfam Plant invertase/pectin methylesterase inhibitor 38 183 IPR006501 GO:0004857
Vra5g0214 539 Gene3D - 223 539 IPR012334 -
Vra5g0214 539 PANTHER PECTINESTERASE 7 538 - -
Vra5g0214 539 Pfam Pectinesterase 229 525 IPR000070 GO:0030599|GO:0042545
Vra5g0214 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 183 IPR035513 -
Vra5g0214 539 CDD PMEI-like_3 41 183 - -
Vra5g0214 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 187 IPR035513 -
Vra5g0214 539 SMART PMEI_2 34 184 IPR006501 GO:0004857
Vra5g0214 539 PANTHER PECTINESTERASE 7 538 - -
Vra5g0214 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 183 IPR006501 GO:0004857
Vra5g0214 539 SUPERFAMILY Pectin lyase-like 226 537 IPR011050 -
Vra5g0214 539 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0214 Vra-Chr5 1838403 1840440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0214 20 539 Carbohydrate Esterase AT2G26440 62.524 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0214 - - gmx:100776969 906.36