Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0213 ATGGCTGTTTTCTGGAGAAAACAACTCGCTCCAATTCCATTTGCCACTTTCATCTTCATCTTCTTCTTCTTTGCTCCATGTGATTTGGCGATACTCCACACCCTCAAAGTTTCTCCTTCCGAATTCGTAAGCTCCGTGAGAAAAGTAGGTGATGTTTTGCAAAACGTTACCTCCACTCTCAAATCTGAGTTCAGCAATGTCAAGAGTGAGTTTCCTCGTTCTGATGCCGTTGTCGCATGTCTTGAGTTGTTGGACTTGTCAGATGATGAACTGAGGTGGTCCGTTTCCACAGTTGAAAGTCCCCAAGGGAAGCATAACAGTACTGGGAATCTGAGCTCTGATTTGAGGACATGGCTAAGTGGTGTACTTGCGAACACAGACACGTGCATGGATGGTTTTGAAGATACAGGGAGGAGTGTGAAGGATCTGATATACGATGAAATTAAGGAAGCGACGTTGTTGCTCCAAAAGCTGGTGAACCAGGTTGGTTCGAATTCTTTCAAAATGGACCAAGTTCCTGCATTGGTTGAACCACTGCTGCAGAGCAAAACGATGCCTCCGGATGTCGTTGTTGCTGCTGATGGGAGTGGTAACTTTACTACGGTGATGGACGCTGTGAATGCAGCTCCTGTATATAGCATGAGACGCTTTGTGATATACATAAAGAAGGGCTTGTACACCGAGACAGTTGAGATTACGAAGAAAAAATGGAACATTGTGATGATTGGAGAGGGCATGGATGATACTGTTATCTCCGGTAACCTCAGCCGTACTGTAAATTTAACCACATACAAAACTGCTACCTTTGCTGTGAATGGGAGAGGATTCATGGCAACAGACATTTCCTTCAGGAACACTGCAGGACCCGAAAGAAACCAGTCTGTTGCACTGAGATCAAACTCTGACCTTTCTGTGTTTTTCCGATGTGGGATTTTTGGCTACCAAGACAGCCTCTATGCCCACTCCTTGCGCCAATTTTACAGAGAATGCAAAATCAGTGGTACTGTGGATTTCATATTTGGACATGCCAGTGCAGTGTTCCAGAACTGCACAATACTGGTGAAGAAAGGGTTAGATAAACAGCAGAACACAATCACAGCTCAAGGAGAAACGTGCCCTCATGGATCATCTGGCTTCTCCATCCAATTCTGCAACATTTCAGCAGACCATGACCTTCTGCCCTCAGTTAAAACCACCTCAACGTACCTTGGCAGACCGTGGAAGAATTATTCTAGAGCTGTTTTCATGCAGTCATACATAAGTGAGGTGTTAAGCCCAAAAGGGTGGCTAGAGTGGGAAGGATCATCATTGTATTTGGACACTTTGTACTTTGGAGAGTACAAGAATTATGGACCAGGAGCTAGGGTTGATAACAGAGTGAAATGGCCAGGGTACCATGTCATAAATGATTCTAGCCAGGCTTATAACTTCACTGTGGCCAATCTCCTTCTGGGGGATCTTTGGTTACCTTCAACTGGTGTAACATACACTCCTGGATTTGGTAACTGA 1509 0.448 MAVFWRKQLAPIPFATFIFIFFFFAPCDLAILHTLKVSPSEFVSSVRKVGDVLQNVTSTLKSEFSNVKSEFPRSDAVVACLELLDLSDDELRWSVSTVESPQGKHNSTGNLSSDLRTWLSGVLANTDTCMDGFEDTGRSVKDLIYDEIKEATLLLQKLVNQVGSNSFKMDQVPALVEPLLQSKTMPPDVVVAADGSGNFTTVMDAVNAAPVYSMRRFVIYIKKGLYTETVEITKKKWNIVMIGEGMDDTVISGNLSRTVNLTTYKTATFAVNGRGFMATDISFRNTAGPERNQSVALRSNSDLSVFFRCGIFGYQDSLYAHSLRQFYRECKISGTVDFIFGHASAVFQNCTILVKKGLDKQQNTITAQGETCPHGSSGFSIQFCNISADHDLLPSVKTTSTYLGRPWKNYSRAVFMQSYISEVLSPKGWLEWEGSSLYLDTLYFGEYKNYGPGARVDNRVKWPGYHVINDSSQAYNFTVANLLLGDLWLPSTGVTYTPGFGN* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0213 502 ProSitePatterns Pectinesterase signature 2. 332 341 IPR033131 -
Vra5g0213 502 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 162 IPR035513 -
Vra5g0213 502 SMART PMEI_2 38 154 IPR006501 GO:0004857
Vra5g0213 502 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 150 IPR035513 -
Vra5g0213 502 Pfam Plant invertase/pectin methylesterase inhibitor 54 143 IPR006501 GO:0004857
Vra5g0213 502 CDD PMEI-like_4 34 166 - -
Vra5g0213 502 PANTHER PECTINESTERASE 37 164 - -
Vra5g0213 502 PANTHER PECTINESTERASE 179 500 - -
Vra5g0213 502 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 37 164 - -
Vra5g0213 502 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 179 500 - -
Vra5g0213 502 Pfam Pectinesterase 188 485 IPR000070 GO:0030599|GO:0042545
Vra5g0213 502 Gene3D - 186 501 IPR012334 -
Vra5g0213 502 SUPERFAMILY Pectin lyase-like 184 499 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0213 Vra-Chr5 1828967 1830873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0213 1 500 Carbohydrate Esterase AT3G43270 50.095 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0213 K01051 - gmx:100798620 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2669 7 46937837 46941908 Vra5g0213 5 1828967 1830873 PCT