Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0212 ATGGCGCTTTCTTCACCCAAACACTTATCTCCAACACTCTTCTTCTTCCTTTTGGTTTTGCCGACTTTGTTCGGTGCCTCACATGGCAGCAGCAACCCCGTGGGATTCGAGTTTCTGAAGGTTTCGCCTTCTGAATTCGCGGGGACAGTGAAAACTGTGGTTGATGTGTTGCAAGATGTGACCTCTATTCTCTCTGAGTTCGGTTCTGACTTCGGGGACTCGCTTCTTTCTAACGCCGTCTCTGATTGTCTAGATTTGCTTGACCTCTCCTCTGATGAACTTGATTGGTCTGTCACCGCTACACAGACTCCCCAAGGGAAGCATAACAGCACAGGAAACCAAAGTTCGGATTTGAGGACATGGCTGAGTGCTGCACTTGCGAACCAAGACACATGCATGGACGGATTCGACGGCACCAACGGCGTTGTGAAGGGTTTAGTGTCCACAGGGCTTGACCAAGTGATGTCGTTGCTGCAACAACTTCTTACACAGGTCAACCCCGTTTCGTACCAATTCCCTTTCTCTTCCACAGACGGACAGTTTCCGTCGTGGGTTAAACCAGGAGACAGGAAGCTGCTCCAGTCAAATGGGCTGGTCGTGGATGCGGTGGTTTCCGCCGATGGCACCGGGGACTTCACCAAAATCAAGGATGCAGTCTTGGCGGCGCCTAACTACAGCATGAAACGCTACGTGATATTCGTGAAGAGAGGGGTTTACCATGAGAACGTTGAGATCAAGAAGAAGAAGTGGAACCTCATGATGATCGGAGAAGGCATGAATGTTACTGTTATCACCGGTAACAGGAGCTTCGTCGACGGTTGGACAACGTTCCGGTCAGCAACTTTTGCTGTGAGTGGCAGAGGATTCATAGCACGAGACATTACCTTCCAGAACACAGCAGGAGCAGCGAAGCACCAAGCGGTGGCCCTGAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGGATTTCTGGTTACCAAGACAGCCTCTATACTCACACCATGCGCCAATTCTACAGAGAATGCAGAATCAGTGGCACTGTGGATTTCATATTTGGTGATGGCACTGTGATTTTCCAAAACTGCCAAATAGAGGTAAAAAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCAAGGAAGGAAAACCCCTGACGAACCAACTGGTTTCTCAATTCAGTTTTGCAACATTTCTGCTGATTCTGAGCTTCTGAACTCTGTGAACTCCACCTACACATACCTTGGCAGACCCTGGAAACAATATTCGAGAACAGTTTTCATGCAATCTTACATGAGTGATGTGTTGAGCCCAGAAGGGTGGTTGGAGTGGGATGGGGACTTTGCCTTGGACACATTGTACTATGGAGAGTACATGAATTATGGAGCTGGTGCTGGAGTTGGTAATCGAGTGAAATGGCCAGGTTACCATGTCATGAATGATTCTAGCCAGGCTAGTAATTTCACAGTGTCACAATTTATTGAGGGGAATCTTTGGTTACCTTCAACTGGTGTAGCATTCACAGCAGGATTGGAAGAATGA 1545 0.4803 MALSSPKHLSPTLFFFLLVLPTLFGASHGSSNPVGFEFLKVSPSEFAGTVKTVVDVLQDVTSILSEFGSDFGDSLLSNAVSDCLDLLDLSSDELDWSVTATQTPQGKHNSTGNQSSDLRTWLSAALANQDTCMDGFDGTNGVVKGLVSTGLDQVMSLLQQLLTQVNPVSYQFPFSSTDGQFPSWVKPGDRKLLQSNGLVVDAVVSADGTGDFTKIKDAVLAAPNYSMKRYVIFVKRGVYHENVEIKKKKWNLMMIGEGMNVTVITGNRSFVDGWTTFRSATFAVSGRGFIARDITFQNTAGAAKHQAVALRSDSDLSVFYRCGISGYQDSLYTHTMRQFYRECRISGTVDFIFGDGTVIFQNCQIEVKKGLPNQKNTITAQGRKTPDEPTGFSIQFCNISADSELLNSVNSTYTYLGRPWKQYSRTVFMQSYMSDVLSPEGWLEWDGDFALDTLYYGEYMNYGAGAGVGNRVKWPGYHVMNDSSQASNFTVSQFIEGNLWLPSTGVAFTAGLEE* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0212 514 TIGRFAM PME_inhib: pectinesterase inhibitor domain 49 159 IPR006501 GO:0004857
Vra5g0212 514 Pfam Pectinesterase 201 498 IPR000070 GO:0030599|GO:0042545
Vra5g0212 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 167 IPR035513 -
Vra5g0212 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 159 IPR035513 -
Vra5g0212 514 SMART PMEI_2 28 164 IPR006501 GO:0004857
Vra5g0212 514 SUPERFAMILY Pectin lyase-like 201 511 IPR011050 -
Vra5g0212 514 CDD PMEI-like_4 10 169 - -
Vra5g0212 514 ProSitePatterns Pectinesterase signature 2. 345 354 IPR033131 -
Vra5g0212 514 Gene3D - 198 512 IPR012334 -
Vra5g0212 514 PANTHER PECTINESTERASE 40 512 - -
Vra5g0212 514 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 40 512 - -
Vra5g0212 514 Pfam Plant invertase/pectin methylesterase inhibitor 73 148 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0212 Vra-Chr5 1816957 1820995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0212 7 512 Carbohydrate Esterase AT3G43270 63.532 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0212 K01051 - gmx:100801813 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0212 5 1816957 1820995 Vra5g0212 5 1816957 1820995 ECH