Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0210 ATGGGTGGTTCTGTCACTGTCAAGTCTGAGGTTTCCCTTCTAGAATCTTCTCCCTCTACTGTGGAGAAACCTGAAGGAGTTTGTTCCAACATGGATGAACACCACCTGGTCCAACCCAATATGAATGACTCCTCAACCAACAAGTCAGTGCCAGCATCTGGACTTAATGCAGTGATTCCTAGTACAAACCAGCTTACCATCTTCTACAATGGGAGTGTTTGTGTCTATGATGGAATCCCTGCAGAAAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCTGCCAAGTCTACTGAAGTGAAGAAGATTGGTACCCAATCTACCCTCATTTCACCTGTTCCCACAAGGCCTTCTTCTCCAAATGCAATCACCAACAATATTGCTGCCTCACAAACGAATTCCATCTGCAGGCTGCAAGAATTTCCAATAGCTCGCAGGCATTCACTTCAAAGGTTTCTTGAGAAGCGGCGAGATAGGCTGGGTAGCAAAGCCCCTTATCCTTCCTCATCAACCACTAAAGTGGCTGATAACATAGAGAACAACTTCTGTGCTGACAATGCCCCAGAACTGATTTCCTTGAACCGAGCAGAGGAGGAATTTCATCCAACTGTCTCTACCTCTTGA 624 0.4567 MGGSVTVKSEVSLLESSPSTVEKPEGVCSNMDEHHLVQPNMNDSSTNKSVPASGLNAVIPSTNQLTIFYNGSVCVYDGIPAEKVHEIMLIAAAAAKSTEVKKIGTQSTLISPVPTRPSSPNAITNNIAASQTNSICRLQEFPIARRHSLQRFLEKRRDRLGSKAPYPSSSTTKVADNIENNFCADNAPELISLNRAEEEFHPTVSTS* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0210 207 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g0210 207 PANTHER DIVERGENT CCT MOTIF PROTEIN 41 185 - -
Vra5g0210 207 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 41 185 IPR040390 -
Vra5g0210 207 ProSiteProfiles Tify domain profile. 58 93 IPR010399 -
Vra5g0210 207 Pfam Jas motif 142 166 IPR018467 -
Vra5g0210 207 SMART tify_2 58 93 IPR010399 -
Vra5g0210 207 MobiDBLite consensus disorder prediction 1 27 - -
Vra5g0210 207 Pfam tify domain 60 92 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0210 Vra-Chr5 1769326 1773248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0210 63 173 Tify Gene Family AT5G20900 52.459 1.38e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vra5g0210 tify 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0210 K13464 - gmx:100306045 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2676 7 47033045 47035455 Vra5g0210 5 1769326 1773248 PCT