Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0203 ATGGTATTCTCAACTGCTTTTCTCCATGAAGGGCCCCCCTTTTTTTCTAGAAAAAGGCCAAGAGCATTAGATTTTGGACATCAAGATATAGATTTACATGCAGATGCAGAAAGGTGCATTAGTACTGGTGATGTCCCCTCTTCCAGTAACACTGATGATAAAGTTGACCCAGATTCTGGAATGGAGATAAGCTGTCCATCAAATGTTAACAATGGCTATGTTCCTGTGTGTTCTACCACAGGGAATATATCACACATGGACCAGAGTTTCTGTGGCTATGTGCAACAGCCTGCTCTAGTGAGTGGATGGATGTATGTGAATGAAAGTGGGCAAATGTGTGGTCCCTATATTAAGGAGCAGTTATACGAAGGCCTAACTACTGGTTTCTTGCCATCTGAGCTTCCTGTGTATCCAGTGATTAATGGCACAATAATGAACCCTGTACCACTGAATTACTTCAAGCAGTTCCCTGATCATGTTTCCACTGGGTTTGCATATCTGATTATGGGTATCTCAGGCACAAGGATGCCTACAACGGCAGTATATGAACAAGATAGATCTTTTGAGGCTGTTCCTCTTGCTGGTAACCCAGATTCAGAATCTGTGTCACATTCACATGTTAATTACTGCAGTAAGGAATCCAATCACTTAAATCCACACTCAGAGCCATTCAACAGTTTAATATCTTGTCAGATGTTACGTGAAGAATGCTGTTGGCTTTATGAGGATGAGAAGGGTATGAAACATGGGCCCCATTCTATCAATGAATTGATTTCTTGGCACAGTCACGGATATCTTAAAGATTCAGCAGTGATCTTTCATTCTGATAAGAAGTATGACACCTTTGTGCTATTGTCTGTTGTCAATGCATTAAAAGGAGATACCACTGGAACCATTTGTAGATCAGGTTCTAAAATTAATGAGGTTGGCGATATGGTAGAGTTGATTAGTGAAATATCTGAGAACATTTCTTCCCAATTGCACATGAGTATCATGAAAGCTGGTCGCAGAGTTGTGCTAGATGGAATTATTGGAGATATTATTGCTGAGTATGTTACAGATAAGAAATGTAAGAGACAAAAGCTAGAATCAGTTGTCCATACTCCTGAAAACAAGATGGTCAGTAAAGGTTCTGCTATTCCTAGTGATCCTGCTACTACCCATATTTATGATGATGAGGCTTGTCATGAAAGCTCGAGACTTCCCTCAGCTGGTTTTAAATCAGTTGGAAGCGTTGAGAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTACTTCTTGATTATTGCATGCAAGTCATGTGGAATGCAGTGTTTTTTGATACAATAGCAGATTACTTATATTCTTGGAGGAAGAGGAAGATTTGGTCTCATCCTGAGCCTCAACCATCTACTCATGCCGAGAAGATTGAATCAGAAGCTTTGGTTCACAAGCCAGATCTCCCTGAAAGCAAAGCTAATGGCTATAATCAGTTTGGAGTATTAATAACAAAAGGAAATCATCCTCATTCATTTTTATCTCCTAGTGGGTTTGAAGGCGGAAACTTACCGAAAGGTCAAAATGTTTCTTCTCCTTACAATGACTCTAAGGATTTGTCATTCATTCTTGAAAGTGTGGAGAATGAGCTTCACTTTTCTTCAAAGGCATCTTTTGCTGATTACATACGACATTTTGTTGAGAAGGAAGTGAACAAAATAGTTCATTTCCCAGAAGAAAGCAAATTAAATGAGGTTGCTGTTAGTGACACTTGTTTTTCAGATATACTTGCTGACAAAACGTCTGTGAAGGAAATTCTAAATGAGAAGTCTTTGAATTCTTTTGAGGAAGGAAATTCATTTGGCAAGCCTGCATCTGGAAACCTTATGTCTGATATATTTTCAAAAGCATTTAAGGAGTTGTGTGGATATGGAGATGATGTGGTTGAAGAGGAGAGTGATAACCTTCCACCTGGAATTGAAGAGAAGAGTCAAACAGTTGTCCTACACCAGGATTTGAAATTTCGACCTTCAAGGTCAGTTGAATGTCATCCTAAGATCACAGAATATGTTGCAACTGCATTGTGCCGACAAAAATTGCATGAAGAAGTTCTGGAAGAGTGGAAGTCGTCGTTTCTTGATTCTGTGCTCGATCAAGTTTTTAGATCAAGTACCTTAAAGAAACATTTTATGTCTGATGGGCAGGAGAAAGGAGAAACGTTCAATTCTAGCAAGGAAAATTTGAATGGTGCTACTTCTGGACTGGGAAGAGAGAAGGAAGGAGGAAAGAGTTCTGAAGTTCGTCTGGTGATTGGAAAGAATACTTATCACCGCAAGAAGCTATTGCGGAAGGAGTTAGTTTCCTCACAGACTGTAGCAGAAAATGATTCTAGGCCAGGGAAGAAGCCCGCAGGCAAGTTGAGGAAACTTGTTTGTGGAGATGTTGGTGAGGCTGTTGAGGTTGAAATAGCTTCTGTTAAACCTGGAAAGACAAAGAAGATTAAAGGGAAGACGGATTCATGTTCTAAGGGCAGGTCTTCTGTCACTCTCAATGCTAGCTCACACAGTGATCAATTATCTTTAAAGAATAAAACTGGTCGGAAAGTGTTGAAGTTTTCAGAGAATGTTATGGATGTTGTGAAATCCACTGTAAAGAAGCTTTCAGTGCCCACTGATAATAGTGTTCGTGACAAGAAGGTTGCCAAAAGTGATGTTAAAGAGAAAGCCACAGGTCATTCCTCGAGAGAGATTCAAAGTGTCTTTGCACACACACAGCAAAAACAAAAGCCTTGTATGTCAATAGCAAATAATAAAGCATCAAAATCAAAAAGGAAACATCAAATGGATGGTACAGCATCTTCACATCCCACGAAGATTTTGAAAATTTCAAATGGTGGTGCTTTTCTGGATGGCAGTAAACAAGTTATTGTGGAAAGGACGAAGTCTGCTAAATCCAAACCATTGAACTTGTGTCCTAAATCTAGTGGATGTGCTAGGACTTCTATTGATGGTTGGGAGTGGCATAAATGGTCTAGAAGTGCCAGTCCTGCATATAAAGCACGTGTTAGGGGCCTTCCGAGTGTCCAGAACAAGTGCATATATTCTGAAAATAATTTATCTCAGTTGCCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGAGTAAAATTACGTAACCTTCTTGCTGCTGCAGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCGATTGCGTTTTCAAAGGAGCAAAATCCATGACTGGGGACTTGTTGCCTTGGAGCCAATTGAAGCAGAGGACTTTGTGATTGAGTATATTGGAGAACTAATTCGTCCTCGGATATCAGATATACGGGAACGTCAATATGAGAGGATGGGAATTGGAAGCAGCTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCCACAAAGAGAGGTGGAATTGCTAGATTTATTAACCACTCATGCCAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAAATTTTCATATATGCAAAACGACATATAAAGGCCGGTGAAGAAATAACATACAATTACAAGTTCCCCTTGGAGGAGAAAAAGATTCCTTGTAACTGTGGTTCCAGAAAGTGTCGTGGATCATTGAATTAG 3636 0.3991 MVFSTAFLHEGPPFFSRKRPRALDFGHQDIDLHADAERCISTGDVPSSSNTDDKVDPDSGMEISCPSNVNNGYVPVCSTTGNISHMDQSFCGYVQQPALVSGWMYVNESGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLIMGISGTRMPTTAVYEQDRSFEAVPLAGNPDSESVSHSHVNYCSKESNHLNPHSEPFNSLISCQMLREECCWLYEDEKGMKHGPHSINELISWHSHGYLKDSAVIFHSDKKYDTFVLLSVVNALKGDTTGTICRSGSKINEVGDMVELISEISENISSQLHMSIMKAGRRVVLDGIIGDIIAEYVTDKKCKRQKLESVVHTPENKMVSKGSAIPSDPATTHIYDDEACHESSRLPSAGFKSVGSVENFWWSYAVVRKVLLDYCMQVMWNAVFFDTIADYLYSWRKRKIWSHPEPQPSTHAEKIESEALVHKPDLPESKANGYNQFGVLITKGNHPHSFLSPSGFEGGNLPKGQNVSSPYNDSKDLSFILESVENELHFSSKASFADYIRHFVEKEVNKIVHFPEESKLNEVAVSDTCFSDILADKTSVKEILNEKSLNSFEEGNSFGKPASGNLMSDIFSKAFKELCGYGDDVVEEESDNLPPGIEEKSQTVVLHQDLKFRPSRSVECHPKITEYVATALCRQKLHEEVLEEWKSSFLDSVLDQVFRSSTLKKHFMSDGQEKGETFNSSKENLNGATSGLGREKEGGKSSEVRLVIGKNTYHRKKLLRKELVSSQTVAENDSRPGKKPAGKLRKLVCGDVGEAVEVEIASVKPGKTKKIKGKTDSCSKGRSSVTLNASSHSDQLSLKNKTGRKVLKFSENVMDVVKSTVKKLSVPTDNSVRDKKVAKSDVKEKATGHSSREIQSVFAHTQQKQKPCMSIANNKASKSKRKHQMDGTASSHPTKILKISNGGAFLDGSKQVIVERTKSAKSKPLNLCPKSSGCARTSIDGWEWHKWSRSASPAYKARVRGLPSVQNKCIYSENNLSQLPNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYERMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCQPNCYTKVISVEGQKKIFIYAKRHIKAGEEITYNYKFPLEEKKIPCNCGSRKCRGSLN* 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0203 1211 MobiDBLite consensus disorder prediction 833 852 - -
Vra5g0203 1211 Pfam SET domain 1084 1188 IPR001214 GO:0005515
Vra5g0203 1211 SMART PostSET_3 1195 1211 IPR003616 -
Vra5g0203 1211 SMART set_7 1072 1195 IPR001214 GO:0005515
Vra5g0203 1211 Coils Coil 1211 1211 - -
Vra5g0203 1211 MobiDBLite consensus disorder prediction 827 852 - -
Vra5g0203 1211 SUPERFAMILY GYF domain 232 286 IPR035445 -
Vra5g0203 1211 MobiDBLite consensus disorder prediction 885 909 - -
Vra5g0203 1211 MobiDBLite consensus disorder prediction 724 758 - -
Vra5g0203 1211 ProSiteProfiles Post-SET domain profile. 1195 1211 IPR003616 -
Vra5g0203 1211 ProSiteProfiles SET domain profile. 1072 1189 IPR001214 GO:0005515
Vra5g0203 1211 Gene3D SET domain 880 1211 IPR046341 -
Vra5g0203 1211 MobiDBLite consensus disorder prediction 929 949 - -
Vra5g0203 1211 MobiDBLite consensus disorder prediction 885 905 - -
Vra5g0203 1211 Gene3D - 228 318 IPR035445 -
Vra5g0203 1211 Gene3D - 92 163 IPR035445 -
Vra5g0203 1211 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 40 1211 IPR044570 GO:0042800|GO:0051568
Vra5g0203 1211 CDD SET_SETD1 1060 1207 - -
Vra5g0203 1211 ProSiteProfiles GYF domain profile. 236 286 IPR003169 GO:0005515
Vra5g0203 1211 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 40 1211 - -
Vra5g0203 1211 SUPERFAMILY SET domain 1068 1208 IPR046341 -
Vra5g0203 1211 MobiDBLite consensus disorder prediction 728 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0203 Vra-Chr5 1653922 1670777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0203 1071 1211 C2H2 Transcription Factor Family AT2G23740 36.810 1.40e-18 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra5g0203 SET 1e-21 No_clan