Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0201 ATGGCGCCGGGAGCAGGAGGCTTGCAGCTCACTTCACTTGCCGGTGGCAGTAGAGCCGCCACAGCTGACTCCGATGACCTCGAGGATGTGCGGCTCTTGGACTCCTACGACAAAATCGACGCTGAAGCGAGGCGGATTCAGGTGACGGTCACCGGCATGACCTGCGCCGCTTGCTCCAATTCCGTCGAATCAGCTCTCAAATCACTTGACGGAGTTATCAGCGCCTCGGTCGCACTGCTTCAGAACAAAGCTGACGTAGTTTTCAACTCGGCTCTGCTCAAGGATGAAGACATTAAAAATGCAATTGAAGATGCTGGGTTTGAAGCCGACATATTACCTGAATCCAGTACTGTTGGAAAGATGCCACATGGAACCTTGGTGGGACAGTTCACAATTGGAGGTATGACGTGTGCAGCATGTGTAAACTCTGTTGAAGGTATTTTAAGAAGTCTTCCAGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCGTCAGGTGAAGTTGAATATGATCCCGGTGTAATTAGTAAAGATGATATAGTCAACGCGATTGAAGATTGTGGTTTTGAAGCTTCATTTTTACAAAGCAATGAACAGGATAAAATAATCTTAGGGGTGGTTGGTGTGTACAGTGTGATTGATGGACAAGTTTTAGAAGGCATTATTAGCAGCATAAAAGGAGTCAGGCAGTTTCATTTTGACCAGATTTCAGGTGAATTGGATGTTCTGTTTGATCCGGAAGTTCTCAGTTCTAGATCCTTAGTTGATGCAATCCATGGCGGAAGCAATGGGAAGTTTATATTACATGTTAGAAGCCCTTATACGAGAATGGCTTCTAAAGGCGTTGAAGAGATCTCAACTATATTTCGGCTCTTTGTCTCTAGTTTGTTACTTAGTATTCCTCTCTTCTTCGTGAGGGTAGTTTGTCCTCATATACCAATGGTGTATTCCCTGTTACTTCGGCGATGTGGGCCTTTCCTCACGAGTGATTGGCTGAAATGGGCATTGGTGAGTCTCATTCAATTTGTGATCGGTAAGCGCTTCTACATTGCAGCTGGCAGAGCTCTTAGAAATGGTTCTACAAACATGGATGTCCTTGTTGCAGTGGGTACTACCGCATCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGATTTTGGTCTCCAACTTACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCTATAAAGAAATTAGTAGAACTTGCTCCTGCGACTGCTTTACTAGTTGTCAAAGATAAAGGTGGTAAATTTATTGAAGAAAGGGAAATTGATTGTTTGCTTGTTCAACCTGGGGACACATTGAAAGTTCTTCCTGGTGCAAAGATCCCCGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAAAGCATGGTAACAGGTGAATCTGTGCCTATTTTAAAGGAGGTGAATGCTTCTGTTATTGGAGGCACAATAAATTTGCATGGTGTCCTTCATGTTCAAGCTGCCAAAGTAGGATCTGAAACAGTTCTGAGTCAGATTATTAGTTTGGTTGAGACAGCGCAGATGTCCAAGGCTCCTATTCAGAAGTTTGCTGATTATGTGGCAAGTATATTTGTTCCATTGGTCGTTTCTTTGGCATTATTGACGTTATTGTGCTGGTACATTGCTGGGTCTATTGGAGCTTACCCAGATGACTGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTGATGTTCTCGATATCTGTAGTAGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACGGCAGTGATGGTGGCAACAGGGGTTGGGGCTAACAATGGAGTGTTAATCAAAGGAGGCGATGCATTGGAAAGGGCCCAGAGGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCACTGTTACTACAGCCAAGACATTCACAGGAATGGAACGTGGAGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCTCTAGCAAAAGCAATATTATCATATGCACGCCATTTTCATTTCTTTGATACTGGTACTGAGAATGATGCTGGGGATGACGTGAAAACTGGCTGGCTTTTTGACGTCTCAGACTTCTCTGCTCTTCCTGGAAGAGGTGTTCAATGTTTGATAGATGGGAAGCGCATTTTGGTTGGTAACAGGAAGTTGATGGCGGAAAATGGCATACATATTTCAACAGAAGTAGAAAATTTTGTGGTAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATATAATGATATATTAACTGGAGTCTTGGGGATTGCGGACCCACTAAAGAGAGAAGCTTCTGTAGTCATAGAGGGTCTCCAGAAAATGGGTGTCACACCTGTTATGGTTACTGGAGATAACTGGAGAACAGCTCGTGCTGTTGCTAAGGAGGTTAGCATACAAGATGTTAGGGCAGAGGTTATGCCAGCAGGAAAAGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGCATAGTTGCTATGGTGGGTGATGGCATCAATGATTCTCCTGCATTAGCTGCAGCTGATGTTGGTATGGCTATCGGAGCTGGAACTGATATTGCAATTGAAGCTGCTGACTATGTGCTGATGAGAAATAATTTAGAAGATGTGATCACAGCCATTGATCTTTCCCGGAAGACCTTCTCTCGAATTCGACTGAATTATGTGTTCGCAATGGCTTACAATGTTGTGGCCTTACCAGTTGCCGCTGGTGTTTTGTACCCTTCACTGGGGATCAAGCTACCACCGTGGGTTGCTGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCCAGACTTACTGCAATACTTGAAATAATTGTAGAATAG 2976 0.4378 MAPGAGGLQLTSLAGGSRAATADSDDLEDVRLLDSYDKIDAEARRIQVTVTGMTCAACSNSVESALKSLDGVISASVALLQNKADVVFNSALLKDEDIKNAIEDAGFEADILPESSTVGKMPHGTLVGQFTIGGMTCAACVNSVEGILRSLPGVKRAVVALATSSGEVEYDPGVISKDDIVNAIEDCGFEASFLQSNEQDKIILGVVGVYSVIDGQVLEGIISSIKGVRQFHFDQISGELDVLFDPEVLSSRSLVDAIHGGSNGKFILHVRSPYTRMASKGVEEISTIFRLFVSSLLLSIPLFFVRVVCPHIPMVYSLLLRRCGPFLTSDWLKWALVSLIQFVIGKRFYIAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKFIEEREIDCLLVQPGDTLKVLPGAKIPADGIVTWGSSYVNESMVTGESVPILKEVNASVIGGTINLHGVLHVQAAKVGSETVLSQIISLVETAQMSKAPIQKFADYVASIFVPLVVSLALLTLLCWYIAGSIGAYPDDWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQRVKYVIFDKTGTLTQGKATVTTAKTFTGMERGEFLKLVASAEASSEHPLAKAILSYARHFHFFDTGTENDAGDDVKTGWLFDVSDFSALPGRGVQCLIDGKRILVGNRKLMAENGIHISTEVENFVVELEESAKTGILVAYNDILTGVLGIADPLKREASVVIEGLQKMGVTPVMVTGDNWRTARAVAKEVSIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVALPVAAGVLYPSLGIKLPPWVAGACMALSSVSVVCSSLLLKRYRRPRLTAILEIIVE* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0201 991 ProSitePatterns Heavy-metal-associated domain. 50 80 IPR017969 GO:0046872
Vra5g0201 991 Gene3D - 43 114 - -
Vra5g0201 991 ProSiteProfiles Heavy-metal-associated domain profile. 127 193 IPR006121 GO:0046872
Vra5g0201 991 CDD HMA 129 192 IPR006121 GO:0046872
Vra5g0201 991 SUPERFAMILY Calcium ATPase, transduction domain A 450 535 IPR008250 -
Vra5g0201 991 TIGRFAM TIGR00003: copper ion binding protein 129 191 IPR006122 GO:0005507
Vra5g0201 991 TIGRFAM TIGR00003: copper ion binding protein 46 109 IPR006122 GO:0005507
Vra5g0201 991 Gene3D - 656 745 IPR023299 GO:0000166
Vra5g0201 991 Gene3D - 746 796 IPR023299 GO:0000166
Vra5g0201 991 ProSiteProfiles Heavy-metal-associated domain profile. 45 111 IPR006121 GO:0046872
Vra5g0201 991 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Vra5g0201 991 Gene3D - 616 922 IPR023214 -
Vra5g0201 991 Pfam Heavy-metal-associated domain 130 190 IPR006121 GO:0046872
Vra5g0201 991 Pfam Heavy-metal-associated domain 48 108 IPR006121 GO:0046872
Vra5g0201 991 SUPERFAMILY HMA, heavy metal-associated domain 42 113 IPR036163 GO:0046872
Vra5g0201 991 ProSitePatterns E1-E2 ATPases phosphorylation site. 651 657 IPR018303 -
Vra5g0201 991 PANTHER ATP7, ISOFORM B 16 984 - -
Vra5g0201 991 SFLD p-type atpase 631 917 IPR044492 -
Vra5g0201 991 SUPERFAMILY Calcium ATPase, transmembrane domain M 384 939 IPR023298 -
Vra5g0201 991 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 363 974 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vra5g0201 991 Pfam E1-E2 ATPase 432 628 - -
Vra5g0201 991 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 402 670 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0201 991 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 735 946 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0201 991 Gene3D - 128 193 - -
Vra5g0201 991 Pfam haloacid dehalogenase-like hydrolase 645 879 - -
Vra5g0201 991 CDD P-type_ATPase_Cu-like 290 961 - -
Vra5g0201 991 SFLD Haloacid Dehalogenase 631 917 - -
Vra5g0201 991 SUPERFAMILY HMA, heavy metal-associated domain 123 198 IPR036163 GO:0046872
Vra5g0201 991 SUPERFAMILY HAD-like 648 971 IPR036412 -
Vra5g0201 991 CDD HMA 47 109 IPR006121 GO:0046872
Vra5g0201 991 PRINTS Copper-transporting ATPase 1 signature 45 70 - -
Vra5g0201 991 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Vra5g0201 991 PRINTS Copper-transporting ATPase 1 signature 100 120 - -
Vra5g0201 991 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Vra5g0201 991 PRINTS P-type cation-transporting ATPase superfamily signature 649 663 - -
Vra5g0201 991 PRINTS P-type cation-transporting ATPase superfamily signature 790 801 - -
Vra5g0201 991 PRINTS P-type cation-transporting ATPase superfamily signature 812 822 - -
Vra5g0201 991 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Vra5g0201 991 PRINTS P-type cation-transporting ATPase superfamily signature 888 900 - -
Vra5g0201 991 Gene3D - 417 539 - -
Vra5g0201 991 PANTHER HEAVY METAL P-TYPE ATPASE 16 984 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0201 Vra-Chr5 1633927 1641259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0201 1 991 Primary Pumps ATPases AT5G44790 73.762 0.0 1491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0201 K17686 - gmx:100804960 1757.27