Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0194 ATGATGGGTGAAACTGAGTCTGAGAGTCCCTTGGGTGCACCAAGCATGAGCCCTATGAGAACAGGAAAACCATGCAGCCCATCAGAGCACAGCATAAGTTTGATGGTTATTTTGGCAGCCATAGTGTGTGCCTTGCTATGTGCTCTTGGTCTGAACACAATGTTGCAATGTGTGTTCCAATGTGCGAATCGTGTTGTGACGGAACCCTTTCAATGGATTGCCTCAAGGAGACTGAATTCAGGGCTGAAGAAGAGAGAAGTGGTGGCTCTGCCAACGTCGACCTACACTCATTCTGGTGGCTCTCCGTGTAACTGTGCCATTTGCTTATCAGAGTTCTGTGATGGGGACAGCATAAGGTTCCTCCCAAACTGCAATCACCGTTTTCATGTTCACTGCATTGATAAGTGGCTCTTTTCTCACTCTTCTTGCCCTACTTGTAGGACCCTCCTCAAGTCTACTCATTCACTACACTCCTTGCATGTTATAGTATCATAG 495 0.4707 MMGETESESPLGAPSMSPMRTGKPCSPSEHSISLMVILAAIVCALLCALGLNTMLQCVFQCANRVVTEPFQWIASRRLNSGLKKREVVALPTSTYTHSGGSPCNCAICLSEFCDGDSIRFLPNCNHRFHVHCIDKWLFSHSSCPTCRTLLKSTHSLHSLHVIVS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0194 164 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g0194 164 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 162 - -
Vra5g0194 164 SUPERFAMILY RING/U-box 104 154 - -
Vra5g0194 164 PANTHER OS06G0666500 PROTEIN 23 162 - -
Vra5g0194 164 SMART ring_2 105 146 IPR001841 -
Vra5g0194 164 Pfam Ring finger domain 104 147 IPR001841 -
Vra5g0194 164 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vra5g0194 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 153 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0194 Vra-Chr5 1597414 1597929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0194 2 150 C3H Transcription Factor Family AT3G10910 38.365 3.09e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0194 - K19040 vra:106760058 340.117