Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0181 ATGGCTTCTTTTCCTCTTTACAAGCCAACCCACACCATTTTCTCCAATACCCAGTTCACGGGCTTGCGCAGTGGCTTTTTCTGGCGACCCTCTTACTCCTTTGAGGCTCTTCCTGAAAACAAAGTACAACCCATTAGAGCTTTGGTTGCTAAATCCCCATTTCCCCTGTTTCAACCTCCTCAAGTTGAAGAAGAGTCACCGTCTGAGTTGGAGCCTGTGGATCCTGACTTCTACAAGATTGGGTATGTCCGAAGCATGCGAGCTTATGGTGTTCAATTTAAAGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAGCCTCTTCGCCGACCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCGGATATAATTCCCTTGGACCATCCAATATTTGATATTATTAACTCAACAAATCCAGAGACAGATTGGGACCTAAGGTTGGCATCACTTCTCCTATTTGCATTTGACTGTGAAGGCAATTTCTGGCAATTGTATGGTGACTTCTTACCAAGTGCAGATGAGTGCACTAGCCTACTTCTAGCTTCAGAGGAAGAACTTTTGGAGCTACAGGATTCCAATCTCGCTTCCACTATTAGAAAACAGCAACAACGAGCCTTAGAATTCTGGCACAAAAATTGGCACAGTGAAGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCACAAAGGTTCATTTGGGCAGTAAGTATTGCACAGTCACGATGTATTAACATGCAAATGAGAGTTGGTGCGCTAAATCAAGAAGCAAACATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTCATAAATGCTGGACATCGTGTTAGAAAGGGAGATGAGATGACAGTTAATTACATGAGTTCGCAGAAGAACGACATGTACATGCAAAGATATGGATTTTCATCACCTGTGAATCCATGGGATGAGGTAGAATTCTCAGGCAATGCACGTATTCATTTGGATTCCTTCTTGTCAATCTTCAATATATCTGGCCTTCGTGAAGAGTATTACCATAACAACGATCTGTCAACGGATGGCAATACTTTTGTTGATGGAGCAGTCATAGCTGCAGCACGAACATTGCCAAGTTGGTCAGACGGGGATGTTCCTCCAATTCCTAGTGTGGAAAGAGAGGCTGTGAAGGAGTTACAAAATGAATGCCAAAAGATGCTCGCAGGATTTGTTACAACCTCTAAGCAAGACCAGAAATTGTTAGATTCCATGACAGATGCTACGAGGACACTAGAAGCTGCAATTAGGTATAGATTGCACAGAAAAATGTTGATGGAGAAAGTTATCAAAGCATTAGACATGTACCAAGAGAAAATACTGTTCTAA 1449 0.4217 MASFPLYKPTHTIFSNTQFTGLRSGFFWRPSYSFEALPENKVQPIRALVAKSPFPLFQPPQVEEESPSELEPVDPDFYKIGYVRSMRAYGVQFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTNPETDWDLRLASLLLFAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDSNLASTIRKQQQRALEFWHKNWHSEAPLKIKRLARDPQRFIWAVSIAQSRCINMQMRVGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGHRVRKGDEMTVNYMSSQKNDMYMQRYGFSSPVNPWDEVEFSGNARIHLDSFLSIFNISGLREEYYHNNDLSTDGNTFVDGAVIAAARTLPSWSDGDVPPIPSVEREAVKELQNECQKMLAGFVTTSKQDQKLLDSMTDATRTLEAAIRYRLHRKMLMEKVIKALDMYQEKILF* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0181 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Vra5g0181 482 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Vra5g0181 482 SUPERFAMILY SET domain 98 338 IPR046341 -
Vra5g0181 482 CDD SET_LSMT 90 337 - -
Vra5g0181 482 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
Vra5g0181 482 Gene3D - 359 480 IPR036464 -
Vra5g0181 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 474 IPR036464 -
Vra5g0181 482 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 50 474 - -
Vra5g0181 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 474 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra5g0181 SET 6.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0181 - - gmx:100786962 850.892