Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0172 ATGTGTAACTCTTCGCTCCCATTGTTTCTTCTTTTGGTTTTCTGCATCGTTTTAGCCTCAGCTGATCCTTATTATGGAAACTCTGACTATAAACCTTCGTCTTCATACACAACCACAACAACTGACACTGTCTTCTCTCTTAAAGTACCAACGTTAGATGAAACCACATTCGATAATCTTCTATCCTTTGGTTACTACCGTAAAAGCTGCCCCCAGTTTGAGTCCATCCTACACAACAAAGTGAAAGAATGGATCAAGAAGGACTACAGTTTAGGAGCCAGTCTCATGAGGCTCCACTTCCATGATTGCTCTGTCAGGGGATGTGACGGGTCTATTCTGTTGAAGCATGATGGAAGTGAGAGGACAGCAGAAGCTAGCAAGACACTGAGAGGGTTTGAAGTGGTGGATGATATCAAGAGAGAGTTAGAGAAACAATGTCCCAAGACTGTGTCTTGTGCTGACATTCTCACTGCTGCTGCACGGGATGCCACAGTTGAGGTAGGTGGACCTTATTGGGCCGTCCCTTATGGTAGGAAAGATGGTAAGGTCTCCATTGCTGAGGAAGCAGCTTTGGTGCCTATGGGCCATGAAAACATCACTTCCATGATTGAGTTTTTCCAGTCCAGAGGCATGTCTGTGCTTGACTTGGTCGTTCTCTCAGGTGCTCATACTATTGGAAGAACTTCATGTGGGTCCATTCAATATAGGCTATACAATTACCGAGGAACAGGAAAACCAGACCCAACAATAAATCCTAAGTATCTGAATTTCTTGCAAAGGAAGTGCAGATGGGCCTCAGAGTATGTGGATCTTGATGCTACAACACCAAAGATCTTTGACAATGTTTACTACATAAATCTGAAGAAGAAAATGGGGTTGTTATCTACTGATCAGTTGCTGTACTCAGATCCAAGGACTGCACCTCTTGTTTCAGCATTGACTGCTACACATTCTGTCTTTGAACACCAATTTGCAGTGTCCATGGGAAAGCTTGGCATTGTTGATGTTCTCACTGACCAAGATGAAGGAGAAATCAGGACAGATTGCAATTTTGTTAATGCTTATTAA 1068 0.4316 MCNSSLPLFLLLVFCIVLASADPYYGNSDYKPSSSYTTTTTDTVFSLKVPTLDETTFDNLLSFGYYRKSCPQFESILHNKVKEWIKKDYSLGASLMRLHFHDCSVRGCDGSILLKHDGSERTAEASKTLRGFEVVDDIKRELEKQCPKTVSCADILTAAARDATVEVGGPYWAVPYGRKDGKVSIAEEAALVPMGHENITSMIEFFQSRGMSVLDLVVLSGAHTIGRTSCGSIQYRLYNYRGTGKPDPTINPKYLNFLQRKCRWASEYVDLDATTPKIFDNVYYINLKKKMGLLSTDQLLYSDPRTAPLVSALTATHSVFEHQFAVSMGKLGIVDVLTDQDEGEIRTDCNFVNAY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0172 355 PRINTS Haem peroxidase superfamily signature 92 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Haem peroxidase superfamily signature 150 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Haem peroxidase superfamily signature 168 180 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Haem peroxidase superfamily signature 215 230 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Haem peroxidase superfamily signature 272 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 ProSitePatterns Peroxidases active site signature. 92 103 IPR019794 GO:0004601
Vra5g0172 355 CDD secretory_peroxidase 61 352 IPR033905 GO:0004601|GO:0042744
Vra5g0172 355 ProSiteProfiles Plant heme peroxidase family profile. 60 353 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 Gene3D - 64 353 - -
Vra5g0172 355 PANTHER PEROXIDASE 25-RELATED 53 352 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 Gene3D Peroxidase, domain 2 193 331 - -
Vra5g0172 355 Pfam Peroxidase 79 313 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PANTHER PEROXIDASE 53 352 - -
Vra5g0172 355 ProSitePatterns Peroxidases proximal heme-ligand signature. 215 225 IPR019793 -
Vra5g0172 355 PRINTS Plant peroxidase signature 70 89 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Plant peroxidase signature 94 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Plant peroxidase signature 130 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Plant peroxidase signature 149 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Plant peroxidase signature 168 183 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Plant peroxidase signature 214 226 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Plant peroxidase signature 270 285 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Plant peroxidase signature 286 303 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 PRINTS Plant peroxidase signature 326 339 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g0172 355 SUPERFAMILY Heme-dependent peroxidases 61 353 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0172 Vra-Chr5 1404242 1405839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0172 57 354 Peroxidase AT1G30870 60.000 1.66e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0172 K00430 - gmx:100527587 614.764