Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0171 ATGAGAGAAGCATCAATGAGGATTTCAACCCTTGGCATTGTGCTCCTCCTGTGTTTTTCTTCTGCACTCCTTTGCCGTGGAAATGAGAGGAGAGTGCTTTTGGAGGTGAAATCATCGTTCACTCAAGACCCAGAAAATGTTTTAAGTGATTGGTCAGAGAACAACACTGATTACTGTAGCTGGAGAGGAGTGTCATGTGAATCAAAGAAGCTCAATTCTTTGGATGATGACCACGACTCGGTGCAAGTGGTGGGACTCAACCTTTCTGATTCGTCACTCGGTGGGTCGATTTCACCTTCACTCGGTCGTTTGCAAAACCTGCTCCACCTTGATCTCTCTTCTAACCGCCTCGAGGGTCCTATTCCATCTGCCCTCTCCAACCTCACTTCGTTGGAATCTCTCCTTCTCCATTCCAACCAACTCACCGGTCATATCCCCAACGAGTTAGACTCGCTAATGCATCTCCGAGTATTACGAATCGGTAACAACCAACTCAGTGGCCCGATTCCTGAGACACTTGGGTATATGCCCAACCTTGAGTACCTTGGTTTGGCCTCATGCAAACTCAGTGGTCAGATCCCCGCCCAGCTAGGTCGACTCAGTGAGTTGCAATATTTGACTCTGCAGGAAAACGAGTTGACTGGGCCGATTCCGTACGAAGTGGGGTACTGCTGGAGCCTTGAAGTCTTCAGCGCCGCTGGGAACAGACTCAATGGCTCGGTTCCGAGTGAACTGAGTCTACTAAGGAAACTTCAAATTCTGAACCTCGCCAACAACAGCTTAACAGGGTCAATTCCGAGTCAACTCGGGCAGCTGAGTCAGCTTACATATCTGAATTTAATGGGTAACGAACTCGAGGGTCGTATTCCACCGTCTCTCGCTCGACTGGGTAAACTTCAAAATCTTGACTTGTCAAATAATACGCTCACTGGGGAAATTCCAGAGGAGTTAGGGAACATGGGTCAGTTACAATATTTGGTTCTCTCTGGGAACAAACTCCATGGAACGATTCCAAGAACCATATGTTCCAATGCAACAAGTTTGGAGAACTTGCTGATGTCAGATTGTGGACTTCATGGTGAGATACCAACTGCGTTGGGTCAGTGCCAATCCCTGAAACAACTTGATTTATCAGGCAATGATCTCAATGGGTCAATACCTATTGAGGTTTATGGGTTGATGGGGCTAACTGATCTCTTGCTTCACAACAACACTTTGGATGGTTCAATCTCTCCCTTCATAGGAAACCTCACTAACATGCAGATTCTTGCATTGTTTCATAACAACTTGCGGGGTAATCTGCCCAGAGAGATTGGGAGACTTGGGAAATTGGAGATAATGTATCTTTATGATAATCGGTTATCAGGGAAGATTCCTTTCGAGATTGGTAATTGTTCAAACTTGCAAATGGTTGATTTTTTTGGAAACCATTTCAGTGGTGAAATTCCCTTCACTATAGGGAGGCTGAAAGAGTTGAACTTTTTGCACCTTCGGCAGAATGAGCTTGTGGGTGTGATTCCCCCCACACTTGGGAACTGTCATAAACTGACTGTGCTGGATTTGGCAGATAATCGGCTCTCAGGTGGCATTCCTGCAACATTTGGATTCCTCAGTGAGTTGAAGCTGTTCATGCTCTACAACAATTCTCTTGAAGGTAGTCTTCCTCACCAACTTGCAAATGTAGCAAACCTGACAAGAGTGAATCTTTCAAATAACAGACTGAATGGTAGTTTGGTTCCACTATGTAGCTCTAGTTCCTTTCTTTCCTTTGATGTCACAGATAATGAATTTGACGGTGAAATACCCTTTGTCCTGGGAAATTCACCTTCCCTTGACAGGCTGAGATTAGGTAACAACAAGTTTTCTGGTGAAATTCCAAGGACATTGGGAAAAGTCACCGCATTGTCATTGTTAGACGTCTCAGGAAATTCACTCACAGGTCGAATACCAGACGAGCTTTCTTTGTGTAGTAACCTGACTCACGTTGATTTGAACAACAATCTTCTAACTGGACACATACCACCATGGCTTGGAAGTTTGTCTCAGTTGGGAGAGGTTAAGCTCTCCTTCAATCAATTTTCTGGGTCTATTCCACTAGGCCTACTCAAACAGCCCAATTTGATTGTTCTTTCCTTGAATAACAATTCTCTCAATGGAAGTCTCCCAAGTGATATTGGTGGTCTTGTATCTCTTAACACCCTCAGGCTGGACCATAATAACTTCTCTGGACCAATCCCTCAAGAAATAGGAAAATTGAGCAATCTTTATGAGCTGCAGCTATCTAGGAATGCCTTTAGTGGGGAAATACCAATTGAGATTGGAAGTCTCCAAAATATTCAAAGCATTTTGGACTTAAGTTACAATAATCTCTCTGGTCATATCCCATCTTCACTTAGCATGCTGTCAAAATTGGAAGTACTTAATCTTTCTCACAATGCACTCACTGGAGAAGTGCCTTCAGCAGTTGGTGAAATGACTAGCTTGCAGAAGCTTGACATCTCTTACAATAACCTTCAAGGAGCATTGGATAAGCAATTCTCCCGCTGGCCTCATGAGTCATTTGAAGGGAACCTTCATCTTTGTGGAGCCTCTCTTGCAAGATGCAAAAGTGGTGATGGTTCCGGCAATAAGCGATCAGTCTTCAGCAGCACATCAGTGGTTATAGTCTCTACACTTTCAGCTTTAGCTGCAATTGCCTTACTTGCACTGGTAGTGATCGTCTTCTTTAAAAGCAAGCATGAATTTTTCAGGAGAGGCAGTGAAGTGAGTTTTGTATTCTCCTCTTCATCACGAGCACATAAACGATCGTTGATCCCTCTAAATGTGCCTGCAAAGAGAGATTTCAGGTGGCAGGATATCATGGGTTCCACAAACAATCTAAGCGACGAGTTCGTAGTTGGTTGTGGAGGTTCCGGGACAGTGTACAGAGTCGAATTGCCCTCTGGAGAGATCGTGGCTGTGAAGAAGATTTCAGGAAAAGATGATTATCTGTTGAACAAAAGCTTTATAAGAGAAATCAAAACTTTAGGGAGGATCAAACATAGGCATCTGGTAAAACTGATGGGTTGTTGCAGCAACAGAATCAAAGGAACAGGTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTTTGGGATTGGTTACATGGGGTGCCCCTCAAAGCAAAGAGGATCCTTGATTGGGACACAAGGTTCAAAATTGCAATGGGATTAGCTCACGGAGTGGAGTACCTCCATCACGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAACATATTACTAGATTCCGACATGGAGGCACACCTGGGAGACTTTGGACTGGCAAAATCACTCGTTGAGAATCCAGAATCTAATGCAGAGTCTAATTCTTGCTTTGCTGGATCTTATGGATACATAGCCCCAGAGTATGCATACTCACTGAAGGGCACAGAGAAAACTGATGTGTACAGCATGGGAGTGGTATTTATGGAACTTGTTACTGGTAAAATGCCAACAGATGCAGCTTTCGGAGCAGAGATAAACATGGTGAGATGGGTGAAGATGCAGCTTGAGAAGGAAGGCATTACGGTTGAAGCAGTGATAGATCCTAAGCTGAAACCCCTTTTGCCTTGTGAAGAGTTTGCTGCATTGCAGGTGCTCGAGATAGCCATACACTGCACAAAAACTGCACCACAAGAGAGACCAACATCAAGGCAAGTATGCAATCATCTCCTTCACGTCTCCAACAACAAAATTGTGGATTTTGAAAAGAAGAATCTGGATCATTACTGGTGA 3792 0.4404 MREASMRISTLGIVLLLCFSSALLCRGNERRVLLEVKSSFTQDPENVLSDWSENNTDYCSWRGVSCESKKLNSLDDDHDSVQVVGLNLSDSSLGGSISPSLGRLQNLLHLDLSSNRLEGPIPSALSNLTSLESLLLHSNQLTGHIPNELDSLMHLRVLRIGNNQLSGPIPETLGYMPNLEYLGLASCKLSGQIPAQLGRLSELQYLTLQENELTGPIPYEVGYCWSLEVFSAAGNRLNGSVPSELSLLRKLQILNLANNSLTGSIPSQLGQLSQLTYLNLMGNELEGRIPPSLARLGKLQNLDLSNNTLTGEIPEELGNMGQLQYLVLSGNKLHGTIPRTICSNATSLENLLMSDCGLHGEIPTALGQCQSLKQLDLSGNDLNGSIPIEVYGLMGLTDLLLHNNTLDGSISPFIGNLTNMQILALFHNNLRGNLPREIGRLGKLEIMYLYDNRLSGKIPFEIGNCSNLQMVDFFGNHFSGEIPFTIGRLKELNFLHLRQNELVGVIPPTLGNCHKLTVLDLADNRLSGGIPATFGFLSELKLFMLYNNSLEGSLPHQLANVANLTRVNLSNNRLNGSLVPLCSSSSFLSFDVTDNEFDGEIPFVLGNSPSLDRLRLGNNKFSGEIPRTLGKVTALSLLDVSGNSLTGRIPDELSLCSNLTHVDLNNNLLTGHIPPWLGSLSQLGEVKLSFNQFSGSIPLGLLKQPNLIVLSLNNNSLNGSLPSDIGGLVSLNTLRLDHNNFSGPIPQEIGKLSNLYELQLSRNAFSGEIPIEIGSLQNIQSILDLSYNNLSGHIPSSLSMLSKLEVLNLSHNALTGEVPSAVGEMTSLQKLDISYNNLQGALDKQFSRWPHESFEGNLHLCGASLARCKSGDGSGNKRSVFSSTSVVIVSTLSALAAIALLALVVIVFFKSKHEFFRRGSEVSFVFSSSSRAHKRSLIPLNVPAKRDFRWQDIMGSTNNLSDEFVVGCGGSGTVYRVELPSGEIVAVKKISGKDDYLLNKSFIREIKTLGRIKHRHLVKLMGCCSNRIKGTGWNLLIYEYMENGSVWDWLHGVPLKAKRILDWDTRFKIAMGLAHGVEYLHHDCVPKIIHRDIKSSNILLDSDMEAHLGDFGLAKSLVENPESNAESNSCFAGSYGYIAPEYAYSLKGTEKTDVYSMGVVFMELVTGKMPTDAAFGAEINMVRWVKMQLEKEGITVEAVIDPKLKPLLPCEEFAALQVLEIAIHCTKTAPQERPTSRQVCNHLLHVSNNKIVDFEKKNLDHYW* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0171 1263 Pfam Leucine Rich repeat 368 384 IPR001611 GO:0005515
Vra5g0171 1263 ProSiteProfiles Protein kinase domain profile. 960 1245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0171 1263 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515
Vra5g0171 1263 Pfam Leucine Rich Repeat 658 680 IPR001611 GO:0005515
Vra5g0171 1263 SMART serkin_6 960 1245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0171 1263 SMART LRR_typ_2 417 441 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 632 656 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 561 586 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 801 824 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 104 127 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 248 272 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 752 776 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 825 856 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 128 152 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 489 513 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 176 200 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 320 344 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 296 319 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 680 704 IPR003591 -
Vra5g0171 1263 SMART LRR_typ_2 705 728 IPR003591 -
Vra5g0171 1263 Gene3D Ribonuclease Inhibitor 537 874 IPR032675 -
Vra5g0171 1263 Pfam Leucine rich repeat 782 838 IPR001611 GO:0005515
Vra5g0171 1263 Pfam Leucine rich repeat 515 574 IPR001611 GO:0005515
Vra5g0171 1263 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 8 1258 - -
Vra5g0171 1263 SUPERFAMILY L domain-like 385 605 - -
Vra5g0171 1263 PRINTS Leucine-rich repeat signature 299 312 - -
Vra5g0171 1263 PRINTS Leucine-rich repeat signature 801 814 - -
Vra5g0171 1263 SUPERFAMILY L domain-like 580 865 - -
Vra5g0171 1263 Gene3D Ribonuclease Inhibitor 189 289 IPR032675 -
Vra5g0171 1263 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 8 1258 - -
Vra5g0171 1263 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Vra5g0171 1263 Gene3D Ribonuclease Inhibitor 391 536 IPR032675 -
Vra5g0171 1263 ProSitePatterns Protein kinases ATP-binding region signature. 966 989 IPR017441 GO:0005524
Vra5g0171 1263 Pfam Protein kinase domain 965 1242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0171 1263 SUPERFAMILY Protein kinase-like (PK-like) 936 1244 IPR011009 -
Vra5g0171 1263 SUPERFAMILY RNI-like 85 407 - -
Vra5g0171 1263 Gene3D Ribonuclease Inhibitor 290 390 IPR032675 -
Vra5g0171 1263 Gene3D Ribonuclease Inhibitor 26 188 IPR032675 -
Vra5g0171 1263 Gene3D Phosphorylase Kinase; domain 1 920 1040 - -
Vra5g0171 1263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1088 1100 IPR008271 GO:0004672|GO:0006468
Vra5g0171 1263 Gene3D Transferase(Phosphotransferase) domain 1 1041 1261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0171 Vra-Chr5 1391433 1395955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0171 155 798 Receptor kinase-like Gene Family AT1G17750 34.776 7.39e-92 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra5g0171 Pkinase 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0171 - - gmx:100797153 1951.02