Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0157 ATGGATCCTGGAAGGGATGCGGGTGGTGTAGCAGGGACAGTTCTAATTCCCATGCGTTTTGTATGGCCATATGGAGGAAGGAGTGTGTTTCTCTGCGGTTCTTTCACACGGTGGTCTGAGCTTCTACCGATGTCGCCAGTGGAAGGTTGTCCAACCGTGTTTCAAGTTATTTATAATTTGCCACCCGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAACATCAACCTTACGTACCAGGAGAATATGGTATGGTCAACACTGTCTTCTTGGCTACTGATCCCAACTACATACCTGTTTTGAATTCAGATGTTGCACCTGGAAATAGCATGGATGTGGATAATGAGGCTTTTCGCCGAGTGGTGAGAGTCCGGTTGACTGATGGTAGTGAGGTGCTGCCTAGAATATCCGAAGCTGATGTACAAATCTCCCGTCAGCGTATTTCTGCATTTCTTTCTTCCCACACTGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCTTTGGACGTTGATCTACCAGTGAAACAGGCATTTCATATACTGCATGAGCAGGGAATTTTCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGTGTTCTCAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTGGGGAATCACGGGTCTAATCTGACAGAGGAGGAGCTTGAAACACATTCCATATCAGCTTGGAAAGAAGGAAAGTCTTATCTAAATAGGCAGAACAATGGACATGGAGCTGTGTTTTCCAGACGTTTTATCCATTCAGGGCCATATGACAATCTGAAAGATATTGCCGTGAAAATCCTCCAAAAGGAGGTTTCAACTGTTCCTGTTATCCATTGTTCTTCTGAACATGCTTCATTTCCACAGTTACTACACCTTGCTTCGCTTTCAGGAATCCTTAAATGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCCTTGCCTGCACTTCAATTTCCAATCTGTGCAATCCCTGTGGGCACGTGGGTACCCAAAATTGGGGAATCAAATCGGCGGCCTCTAGCAATGTTGAGACCAACCGCTTCTCTTGCTTCCGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGCTCAATACCTATAGTTGATGATAATGACTCGTTACTGGATATATATTGTCGGAGTGACATAACAGCTTTGGCGAAGAACAGAGCGTATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCCTATGAGCTTAGAAGTCAAAGGTGTCAGATGTGTTTGCGTTCTGATTCTTTGCATAAAGTGATGGAACGCTTGGCAAATCCAGGTGTGAGGCGGCTTGTGATTGTGGAAGCCGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGCGACATATTCAAGTTCTTCCTTGGTGGTTAG 1461 0.4442 MDPGRDAGGVAGTVLIPMRFVWPYGGRSVFLCGSFTRWSELLPMSPVEGCPTVFQVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGEYGMVNTVFLATDPNYIPVLNSDVAPGNSMDVDNEAFRRVVRVRLTDGSEVLPRISEADVQISRQRISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHSISAWKEGKSYLNRQNNGHGAVFSRRFIHSGPYDNLKDIAVKILQKEVSTVPVIHCSSEHASFPQLLHLASLSGILKCICRYFRHCSSSLPALQFPICAIPVGTWVPKIGESNRRPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLGG* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0157 486 SUPERFAMILY CBS-domain pair 152 322 IPR046342 -
Vra5g0157 486 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Vra5g0157 486 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 8 485 - -
Vra5g0157 486 Pfam Glycogen recognition site of AMP-activated protein kinase 16 96 IPR032640 -
Vra5g0157 486 Gene3D - 142 325 IPR046342 -
Vra5g0157 486 SUPERFAMILY E set domains 16 97 IPR014756 -
Vra5g0157 486 ProSiteProfiles CBS domain profile. 431 486 IPR000644 -
Vra5g0157 486 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 485 - -
Vra5g0157 486 SUPERFAMILY CBS-domain pair 350 485 IPR046342 -
Vra5g0157 486 ProSiteProfiles CBS domain profile. 349 406 IPR000644 -
Vra5g0157 486 SMART cbs_1 435 484 IPR000644 -
Vra5g0157 486 SMART cbs_1 171 220 IPR000644 -
Vra5g0157 486 SMART cbs_1 353 401 IPR000644 -
Vra5g0157 486 Gene3D - 342 485 IPR046342 -
Vra5g0157 486 CDD E_set_AMPKbeta_like_N 17 95 - -
Vra5g0157 486 Pfam CBS domain 351 397 IPR000644 -
Vra5g0157 486 Pfam CBS domain 438 484 IPR000644 -
Vra5g0157 486 Gene3D Immunoglobulins 16 109 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0157 Vra-Chr5 1265103 1274047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0157 6 138 Protein tyrosine phosphatase (PTP) family AT3G01510 26.471 6.80e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0157 - - gmx:100785692 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2867 7 48823398 48830820 Vra5g0157 5 1265103 1274047 PCT