Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0153 ATGGAAGATAGCTTTGGAGGCAGTTCCTCGAAGGACAAGTGCAGCATCAAGGAACAAGACCAGTTGCTGCCAATAGCCAATGTTGGTCGGCTCATGAAGCAGATTCTGCCGCAGAATGCAAAGATCTCGAAGGAAGCAAAAGAGACAATGCAAGAATGTGTGTCGGAGTTCATAAGCTTTGTGACAAGTGAAGCTTCCGAGAAGTGCAGAAAGGAGAGGAGAAAGACAGTGAATGGTGATGACATTTGCTGGGCATTGGCTACGCTAGGATTTGATGACTATGCTGCACCAATGAGAAGGTACTTGCACAGATTTAGAGAGCTTGAGCAAGACCATAATAATAGTAAGCTCAATCATGATGAAAGATAA 369 0.4444 MEDSFGGSSSKDKCSIKEQDQLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAAPMRRYLHRFRELEQDHNNSKLNHDER* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0153 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 86 IPR003958 -
Vra5g0153 122 Gene3D Histone, subunit A 9 122 IPR009072 GO:0046982
Vra5g0153 122 SUPERFAMILY Histone-fold 19 120 IPR009072 GO:0046982
Vra5g0153 122 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Vra5g0153 122 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Vra5g0153 122 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Vra5g0153 122 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra5g0153 122 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vra5g0153 122 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 9 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0153 Vra-Chr5 1224504 1224872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0153 16 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.778 1.10e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra5g0153 CBFD_NFYB_HMF 2.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0153 K08065 - gmx:100794513 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0153 5 1224504 1224872 Vra5g0153 5 1224504 1224872 ECH
Vra7g2864 7 48767649 48768047 Vra5g0153 5 1224504 1224872 PCT