Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0152 ATGTTTCGCTTCCAAAGCATCAAACCCCTTTTTCTCCACTCCAAGGGACTCACAACCCCTTTTCCCTCAACACTCTCTCTGAAACACTTCTCCCTCACTTCGCAACAACACTCATTCACCGTTTCCTACCTCATAGACACCTTTGGTTTCTTACCACAAGCCGCTCTCAAGGCTTCCAAGCGCGTTAGCTTCGATACCCCTCAAAAGCCCGACTCAGTCATCGCTTTCTTCAACAGAAACGGATTCACCCACGCTCACATCAACAACATCGTCAAAAGCATACCCAACATACTCATATACAACGCTGACGAGAAGCTTTCGCCAAAGTTCCAATTTTTACGCTCAAAAGGTGCTTCTGCTTCTGATATCGTTCGCCTCGTTAATAGGTGCCCCAGAATCCTCACATCCAGCCTCAAGAACAACGTGATCCCCTCCTTCGAATTGGTGAAAAGGTTCCTCCAATCTGACCAGAAAACCATTGATTGTGTTTTCGGTAGTAGACCTTTCCTTCGATATAACGTTGGAGCGCAGAATGTGGACATGTTGCTTGATGTTGGAGTCAGGGACTCCGGCATCGGCTATTTGTTCGGAAGGAGGCCCTCTATACTCTTGTCTACTGACTTGAGGGAGGCTATTGATGAAGTTAAGGAAATGGGGTTCGACCCTTCCAAGATAAATTTCGTCATTGCCTTGCACGCCAAAAGGGCTCTGTCGAAATCGCGGTGGGACGCGAAAGTTGATGCCTTTAAGATGTGGGGTTGGTCTGAGGAAATGGTTTTTGATTCGTTCAGGAAGCATCCCCTCTTAATGTTGGTATCCAAAGATAAAATTAATGAGATCATGAGATTTTGGGTTGTTGAATTAGGTTGGGACCCTTTGGCACTTGCCGAAATGCTCAATATTTTTGGATTCAGTTTGGAGAAAAGGATTGTTCCGAGGGGTTTGGTTGTCCGGTATTTGATTGTCAAAGGTTTGAGAGAGAAGAGTGCCAAGTTGTATACCCCGTTTAGTGTTTCTGAAGAGTTGTTTCTTAAAAGATTTGTGATGTGTTTTAAGGAGGAATCGTCTCAACTGTTAAAGCTTTATCAGAACAAAAAATGTTTCCAAGAAAACAGAGAGGACGGTGTAGAATCTGCCAGTTAG 1143 0.4462 MFRFQSIKPLFLHSKGLTTPFPSTLSLKHFSLTSQQHSFTVSYLIDTFGFLPQAALKASKRVSFDTPQKPDSVIAFFNRNGFTHAHINNIVKSIPNILIYNADEKLSPKFQFLRSKGASASDIVRLVNRCPRILTSSLKNNVIPSFELVKRFLQSDQKTIDCVFGSRPFLRYNVGAQNVDMLLDVGVRDSGIGYLFGRRPSILLSTDLREAIDEVKEMGFDPSKINFVIALHAKRALSKSRWDAKVDAFKMWGWSEEMVFDSFRKHPLLMLVSKDKINEIMRFWVVELGWDPLALAEMLNIFGFSLEKRIVPRGLVVRYLIVKGLREKSAKLYTPFSVSEELFLKRFVMCFKEESSQLLKLYQNKKCFQENREDGVESAS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0152 380 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 15 367 - -
Vra5g0152 380 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Vra5g0152 380 SMART mt_12 292 326 IPR003690 GO:0003690|GO:0006355
Vra5g0152 380 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Vra5g0152 380 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Vra5g0152 380 SMART mt_12 193 221 IPR003690 GO:0003690|GO:0006355
Vra5g0152 380 Pfam mTERF 177 343 IPR003690 GO:0003690|GO:0006355
Vra5g0152 380 Pfam mTERF 75 168 IPR003690 GO:0003690|GO:0006355
Vra5g0152 380 PANTHER CGI-12 PROTEIN-RELATED 15 367 IPR003690 GO:0003690|GO:0006355
Vra5g0152 380 Gene3D Transcription termination factor 3, mitochondrial 173 361 IPR038538 -
Vra5g0152 380 Gene3D Transcription termination factor 3, mitochondrial 50 172 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0152 Vra-Chr5 1216470 1218258 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra5g0152 mTERF 9.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0152 K15032 - gmx:100792944 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2863 7 48756597 48761363 Vra5g0152 5 1216470 1218258 PCT