Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0151 ATGGTTAGAAGGTCACCATGGTTGCTTTCCTGTGACCCATGCAAAAGGGTAATGCCAAAGTTTGAATTTTTTCTCTCAAAGGGTGTTTCTAGCTCTGAAATTGTTGACCTAGTGAATAAGTACCCTGCAGTACTGGGTTCAAGCCTGAAGAATCAGATAGTTCCAACCTATGAATTGATTTATAAGTTCTTGCAATCTGATGTGAAGACTATTGGTTGTATGCTTGGTAATTCATTTTTCTGTCGGGGCGATATTCTAGCACACAACATCAGATTGCTGCTGAAGAATGGAGTGGGAGAAACGAACATTTCAAGATTGCTTGGGAACCGTTGTAAGGGGGTCTTTTGCTCAAATGATATGGTTAAGTTGGTGAAGGAAGTAAAGGATTTGGGATTTGATCCTTCAAAAGCAGCTTTTGCTGTAGCGTTGATGGCCAAAAAAGAAACGACTCCTTCCATGTGGAAGCAGAAAGTTGATACCTTAAAGAAATGGGGTTGGTCTGATGAAGCCTTTTCTGAAGCATTTAGGAGGCACCCTCACATTATGTTGGCATCCATTAAGAAAATAAATGTTGTGATGAACTTTTGGGTCAATCAGTTGGGTAGGGATGCTCTGGAACTTGTCCGTTTTCCGAAGATTTTCGGGTTGAGTATGGAAAAGACAATCATTCCAAGGTATCGTGTTGTCCAGCATTTACTTGCTGAAGGCCTGAGGAAAAGCACTGCCAGCTTTTTGACGCCGATTGCTATTTCTGAAAAGGCCTTTCTTGAAACCTTTGTGACATGTTTTAAGGAGGAATCATATCAACTATTAAAGTTGTACCAGGAAAAAGTTAGTGTTCAAGGAAAAGAGGAGGTTGGTGCGGCATGGGGCAATTCTCAAATTGTTAACTCATGA 897 0.4091 MVRRSPWLLSCDPCKRVMPKFEFFLSKGVSSSEIVDLVNKYPAVLGSSLKNQIVPTYELIYKFLQSDVKTIGCMLGNSFFCRGDILAHNIRLLLKNGVGETNISRLLGNRCKGVFCSNDMVKLVKEVKDLGFDPSKAAFAVALMAKKETTPSMWKQKVDTLKKWGWSDEAFSEAFRRHPHIMLASIKKINVVMNFWVNQLGRDALELVRFPKIFGLSMEKTIIPRYRVVQHLLAEGLRKSTASFLTPIAISEKAFLETFVTCFKEESYQLLKLYQEKVSVQGKEEVGAAWGNSQIVNS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0151 298 PANTHER CGI-12 PROTEIN-RELATED 1 283 IPR003690 GO:0003690|GO:0006355
Vra5g0151 298 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Vra5g0151 298 SMART mt_12 172 203 IPR003690 GO:0003690|GO:0006355
Vra5g0151 298 SMART mt_12 35 66 IPR003690 GO:0003690|GO:0006355
Vra5g0151 298 SMART mt_12 1 30 IPR003690 GO:0003690|GO:0006355
Vra5g0151 298 Pfam mTERF 154 255 IPR003690 GO:0003690|GO:0006355
Vra5g0151 298 Pfam mTERF 2 129 IPR003690 GO:0003690|GO:0006355
Vra5g0151 298 Gene3D Transcription termination factor 3, mitochondrial 77 273 IPR038538 -
Vra5g0151 298 Gene3D Transcription termination factor 3, mitochondrial 1 76 IPR038538 -
Vra5g0151 298 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0151 Vra-Chr5 1208070 1210027 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra5g0151 mTERF 4.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0151 K15032 - gmx:102663414 398.282