Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0149 ATGTTCAATAAACTTCTGTACTTGAAATGTGTCACTTCCACAGCAACATCACGTTACCCTTTCGTCTTTTCTCTTCGTTTCCGCACAGTCACTTCAAATTCACGCTCATTTGTCATATCCTACCTCGTTGACAACTTTGGGTTTTCCCCTGAATCTGCTTCGGAAAAATGTAAGTCCTACAATATTTCTTTCCATACCCCAGAAAAGCCCGAGACAGTGATCAGGTTCTTCAGAAATCACGGTTTCTCTAATATTCAAATAAACTATATGGTTAGAAAGGCACCGTGGTTGCTTTCTTGGGACCCCTGCAAAACGTTATTGCCAAAGTTTGAATTTTTTCTCTCAAAGGATGTTTCTAGCTCTGAAATTGTTGACCTAATAAGTAAGTACCCTGCAGTACTGCGTTCAAGCCTGAAGAATCATATAGTCCCAACCTATGAATTGATATATAAGTTCTTGCAATCTCATGTGAGGACTAATCGTTTTATGTTTCGTAATACATGTTTCTTTAGCGGGGATCGTCTGACACATAAAATCACATTGCTGCTAGAGAATGAAGTGAGCGAATCAAATATTGCAAGATTGCTTGGGAACCATAGTAAGGCTGTCCTTGCCTCAAATGATATAGTTAAGTTGGTGAAGGAAGTAAAGGATTTGGGGTTTGATCCTTCAAAAGAAAGTTTTGTTATAGCGATGATGGCCATAAAAAAAATAAGTCCTTCTCTGTGGAAGGAGAAAGTTGATGTCTTCAAGAAATGGGGTTGGTCTGATGAAGCGATGTCTGAAGCATTTAGGAGGCACCCTCACTTTATGTTGAAATCTATTAAAAAAATAAATGCTGTGATGAACCTTTGGGTTAATGAGTTGGGAAGGGATCCTTTGGAACTTGTCCATCGTCCAATGATTTTCGGTTTGAGTATGGAAAAGAGAATCATTCCAAGGACCCGTGTTGTCCAGCATTTACTTGCTAAAGGCTTGAGGAAAAGTGCCAGCTTTGTTTCTCCATTAAATGTTTCTGAAAAGTTATTTCTTGCAAGGTTTGTGACATGTTTTAAGGAGGAATCATGTCAACTATTAAAGCTGTATCAGGAAAAAGTTAGTGTTCAAGGAAAAGAGGAGGTTGGTGCAGCATGGGGCAGTTCCCAAATTGTTAACTCATGA 1161 0.3893 MFNKLLYLKCVTSTATSRYPFVFSLRFRTVTSNSRSFVISYLVDNFGFSPESASEKCKSYNISFHTPEKPETVIRFFRNHGFSNIQINYMVRKAPWLLSWDPCKTLLPKFEFFLSKDVSSSEIVDLISKYPAVLRSSLKNHIVPTYELIYKFLQSHVRTNRFMFRNTCFFSGDRLTHKITLLLENEVSESNIARLLGNHSKAVLASNDIVKLVKEVKDLGFDPSKESFVIAMMAIKKISPSLWKEKVDVFKKWGWSDEAMSEAFRRHPHFMLKSIKKINAVMNLWVNELGRDPLELVHRPMIFGLSMEKRIIPRTRVVQHLLAKGLRKSASFVSPLNVSEKLFLARFVTCFKEESCQLLKLYQEKVSVQGKEEVGAAWGSSQIVNS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0149 386 Gene3D Transcription termination factor 3, mitochondrial 161 360 IPR038538 -
Vra5g0149 386 Pfam mTERF 244 343 IPR003690 GO:0003690|GO:0006355
Vra5g0149 386 Pfam mTERF 75 280 IPR003690 GO:0003690|GO:0006355
Vra5g0149 386 PANTHER CGI-12 PROTEIN-RELATED 13 371 IPR003690 GO:0003690|GO:0006355
Vra5g0149 386 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 13 371 - -
Vra5g0149 386 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Vra5g0149 386 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Vra5g0149 386 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Vra5g0149 386 SMART mt_12 293 327 IPR003690 GO:0003690|GO:0006355
Vra5g0149 386 SMART mt_12 13 49 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0149 Vra-Chr5 1189454 1204316 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra5g0149 mTERF 7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0149 K15032 - gmx:102663414 469.159