Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0148 ATGTTTCATTCCCAACGCTTCAAACTCTTTCTTCTCTATCGGAAGTCATTCTCAATAACCCCTCTTCAAACCCGACAACCCAACAATCCATTATCCTCGATACTCTCTCTGAAACACTCTTCAAATGCTTCACAGCAACAACACTCTTTCATGGTTTCCTATCTCGTAAACGACCGCGGGTTCTCCCCAGAAACCGCTCTGAAGGCTTCCAAATTCATTCAATTCGAGACCTCGGAAAAGCCCGACTCAGTCATCGCATTCTTCAGAGATAACGGATTCAGCAATACCCAGATAAACAGCATTGCCGAAAGAGCACCCAAGGTTCTCACTTGCGACCCCCACAAAAGGGTTTTTCCAAAGTTCGAGTTTTTACTCTCGAAAGGGGCCTCACGCTCTGACATTGTGGAACTGGTGAGTAGGAGCCCCAGAATCCTTTACTGCAGCCTCGAGAATAACATTGTCCCTTCGTATGAACTGATGAGGAAGTTTTTTCAAACCGATAAGGAAACGATGGATTGCATACGCTCTTGTGGTCATTTCTTTGGTACTGATCGTGTGGTGAAGAATGTGGAACTTTTGGTTGATGATGGAGTCACTGATCGTGTACTAGCCTTTGTGTTACGCAGGAGAATTTCTATAATCTTGTGTTCTTCCTTGAAGAGGACTTTGGATGAGGTTAAGGAAATGGGGTTTGATCCTTCCAAGTTGAGCTTTGCCATCGCGCTGGTGGCGAAAACGACCATTCCGAAATCTCGATGGGAGAGGAAAGTTGATGCCTTTAAGAGATGGGGTTGGTCTGAAGAATTGGTTCTCAGAGTGTTTAGGAGGCAACCCCTCGTAATGTTGGTGTCCCAAGAAAAAATTGATAGGATTATGAGATTTTGGGTTAAGCAATTAGGTTGGGACTATTTGGCTCTTACCAAGAAACCAGAGATTTTTGGATTTAGTTTGGAGAGAAGGATCATTCCAAGGGCACTTGTTGTCCAGTATTTACTCAAGAAAGGTTTGAGGAGTAAGAGTGCCAGCTTGATTACGCCATTTTCTGTTTCTGATAAGGTATTTATTGAAAACTATGTCATGCGTTTTAAGGAGGAGACAAGTGAACTACTAAAGCTGTACCAATTCAAAGACTAA 1134 0.433 MFHSQRFKLFLLYRKSFSITPLQTRQPNNPLSSILSLKHSSNASQQQHSFMVSYLVNDRGFSPETALKASKFIQFETSEKPDSVIAFFRDNGFSNTQINSIAERAPKVLTCDPHKRVFPKFEFLLSKGASRSDIVELVSRSPRILYCSLENNIVPSYELMRKFFQTDKETMDCIRSCGHFFGTDRVVKNVELLVDDGVTDRVLAFVLRRRISIILCSSLKRTLDEVKEMGFDPSKLSFAIALVAKTTIPKSRWERKVDAFKRWGWSEELVLRVFRRQPLVMLVSQEKIDRIMRFWVKQLGWDYLALTKKPEIFGFSLERRIIPRALVVQYLLKKGLRSKSASLITPFSVSDKVFIENYVMRFKEETSELLKLYQFKD* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0148 377 Gene3D Transcription termination factor 3, mitochondrial 166 372 IPR038538 -
Vra5g0148 377 Pfam mTERF 253 354 IPR003690 GO:0003690|GO:0006355
Vra5g0148 377 Pfam mTERF 86 289 IPR003690 GO:0003690|GO:0006355
Vra5g0148 377 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Vra5g0148 377 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Vra5g0148 377 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Vra5g0148 377 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Vra5g0148 377 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Vra5g0148 377 PANTHER CGI-12 PROTEIN-RELATED 5 375 IPR003690 GO:0003690|GO:0006355
Vra5g0148 377 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 5 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0148 Vra-Chr5 1186520 1188059 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra5g0148 mTERF 3.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0148 K15032 - gmx:102666739 517.694