Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0139 ATGGATTTCTTAGACCAGGAGATAAGCATGCATAGCCCTGAAGGTGAACTTAAAATAAGTTTTGGCTATCAATGCAATAGTGATAGAGGTATACCTTGCAAAGAAATCAATAGAACAAGCAGTTTCTCTTGCTTATCCGGTGCTGCCTTAAGTGCAAATGCTACACTTGCCAACACAAATATCTGCAATGGCGTAATAGGAGAAGAAATCCTTCCGAGTTTGGACTCTCCTAAATCGTTTCGAACAGTACCCTCTTCGTCAAGTTTTCCGAAGTTGGAAATATTATCATCTTCTGTCCATAGTAGTTTTTCAAATCTAAGTTGCAGCCCTTCCACTCCAACTAACATGCTTGAATATGACTCATGTTCATTAAAATCAATGAGTGCTCCTTCGAGAACTGAAGGTTTTCTTAATGCCATGGATGTTCAAGTTGCTGGAGGAGCGGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTCTTCTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCAGCCGACTTTTTGGCGGGTACCCTTTATGACACCATTGTATCTTATTTTAATATGTTACGTTGTGATTTGGAACCAGATTTCATGAAAGCTTCTGACAATGTGGCTGTGGGTGAATCCTTTCCATATAATTTGGATGATAGTCTTATTCTTCAGGAGCACCAATCTCCTTCAAAATTTAAGGGAAACAATTCTGGTCTTGACTGTTTTGCAAACATTACTCCACCTTCCAAGTCAGAAGCATCCCCTAAATCATTTTCTCATAGTAAAGTACTTGATGGTCTCCAGCAAGTTCTTAGTCAGGTTGAGAATGATTTCTTATGCATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTTTCTATTGGATCTTGTGTTTTGCTTGTGCTTCTTCATGGCAATGATTTATATACACTTAATCTTGGTGACAGCAGAGCAGTATTGGCAACATGCTGTACAGATAACAGAATGAATGGGAATGAGAGATTGAAGGCTATTCAGCTCACAGATTCTCATACCGTTGACAATGAAGCCGAAAGAGCTCGAGTTCTTGCTGATCATCCTGATGATCCTAAAGCCATAGTAGCAGGGAAAGTGAAGGGAAAACTGAAGGTTACTCGAGCTTTAGGAGCAGGGTACTTGAAAAAGAAAATTCTGAATGACGCATTAATGGGAATCCTTCGAGTTCATAATCTCACAAGCCCACCATATATTTCAACTGATCCATCGTTGAATGTGCACAAAATCTCAGATTCTGACCAATTTGTTATAGTTGCGAGTGATGGATTATTTGACTTCTTCAGTAATGATGAAGCAGTAGAGCTTGTAGAGTCTTATATATTGAGAAACCCTTTTGGTGATCCAGCAAAATTTCTTATTGAGCAATTAGTTGCAAGAGCAGCTGATTCGGCAGGCTTCAGCATGGAGGAGTTGATGAATGTTCCCGACGGGAGGAGGAGGAAGTACCATGATGATGTGACGGTAATGGTGATCATCCTTGGCATGAATCAACGGACTTCAAAAGCATCAATTTGCACCTAG 1575 0.4032 MDFLDQEISMHSPEGELKISFGYQCNSDRGIPCKEINRTSSFSCLSGAALSANATLANTNICNGVIGEEILPSLDSPKSFRTVPSSSSFPKLEILSSSVHSSFSNLSCSPSTPTNMLEYDSCSLKSMSAPSRTEGFLNAMDVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIVSYFNMLRCDLEPDFMKASDNVAVGESFPYNLDDSLILQEHQSPSKFKGNNSGLDCFANITPPSKSEASPKSFSHSKVLDGLQQVLSQVENDFLCMVEQEMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCCTDNRMNGNERLKAIQLTDSHTVDNEAERARVLADHPDDPKAIVAGKVKGKLKVTRALGAGYLKKKILNDALMGILRVHNLTSPPYISTDPSLNVHKISDSDQFVIVASDGLFDFFSNDEAVELVESYILRNPFGDPAKFLIEQLVARAADSAGFSMEELMNVPDGRRRKYHDDVTVMVIILGMNQRTSKASICT* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0139 524 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 8 523 - -
Vra5g0139 524 CDD PP2Cc 149 511 IPR001932 -
Vra5g0139 524 Gene3D - 106 520 IPR036457 -
Vra5g0139 524 SMART PP2C_4 127 509 IPR001932 -
Vra5g0139 524 Pfam Protein phosphatase 2C 261 466 IPR001932 -
Vra5g0139 524 ProSiteProfiles PPM-type phosphatase domain profile. 136 511 IPR001932 -
Vra5g0139 524 SUPERFAMILY PP2C-like 149 512 IPR036457 -
Vra5g0139 524 PANTHER PROTEIN PHOSPHATASE 2C 8 523 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0139 Vra-Chr5 1140674 1144475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0139 13 521 PP2C-type Phosphatase Gene Family AT3G16560 62.214 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0139 - - gmx:100791404 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0139 5 1140674 1144475 Vra5g0139 5 1140674 1144475 ECH
Vra7g2850 7 48652547 48656157 Vra5g0139 5 1140674 1144475 PCT