Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0138 ATGCAGAACGAGGAAGGACAGATCACTGAGCTTTACATCCCTAGGAAGTGTTCTGCTACAAACAGATTGATTACTGCGAAAGACCATGCTTCCGTTCAGATTAACATTGGGCATGTGGATGAGAATGGTATCTACAATGGCCAATTCTCCACCTTTGCTCTCTGCGGCTTCATCCGTGCTCAGGGTGATGCTGACAGTGCCCTAGATCGCTTGTGGCAGAAGAAGAAAGTTGAAGTTAAGCAACAGTAG 249 0.4659 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHVDENGIYNGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVKQQ* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0138 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vra5g0138 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vra5g0138 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Vra5g0138 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vra5g0138 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Vra5g0138 82 Gene3D - 1 81 IPR038579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0138 Vra-Chr5 1138251 1139739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0138 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 85.185 1.36e-52 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0138 K02971 - gmx:100817753 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2848 7 48616569 48617897 Vra5g0138 5 1138251 1139739 PCT