Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0132 ATGTCACCACGCTTTCAAATGCTTCATTTTAACATGTCTTCTTCCTCTCCACCTTCTTGGCTCACTTCACCTTCATGTTCCACTCTTGGCATAGATTCATCTTCTCCTACTGCTTTTCTTGTAGTTCAGTGGTTAAGGTTTCTTCTTCTATCACCCTGTCCTCAACGACTTCTTCTATCTGTTTTTGATTTTATCTTCTTGCTCATTGTCTTAGCCTTTGCAGCTGTTAAACTCTATTCTAGACTCACTTCCCGTCACACCTCTTCCTCTTCTATTACTAAACCCCTTTTGCAGGAGAAACGCTCTCACTATAAAGTCACCTTCTGGTTCAAACTAACCTTCTTCGTCACCACCCTTTTGCTCGCAGCTTATACTGTTCTTGGCGTATTGGCCTTTCAAACCAGTCTTTCTTCATGGGTAGTCATAGAGGCACTCTTTCGGCTCTTTCAAGCTGTGGCCAACATACTGGTTGTGATCCTGTTGGTTCACGAGAACAAGTTCAAAGCTTCGGAGCACCCTTTATCGCTGAGAATGTATTGGATTGCAAACATGGTGGTTTCATGCCTTTTTGCCATTTCGGCTGTTGTTCGCTTTGTGGTTGTGGATGGAGCGAGGTTGGAGCTTAGTTTGAGAGTGGATGACGTGTTTTCTTTGGTTAATCTCCCATTTTCTGCGTTCCTTTTCGTTGTAGCAATGAAAGGAGTAACGGGGATTCAGGTGATTAGAACTTCTGATGAAGTGACAGCATATCAGTGCCTTTCCAATGAGAGAAATTTGAGTCCTTATGCTCATTCTTCGATTTTTTCCAAAATAGTGTGGCTTTGGATTAACCCTTTGCTGAACAAAGGGTACCAAACACCCCTCAAGCTCGATGATGTGCCTTCTCTTCCTCTGGATTTCCGAGCAGAAAAGATGTCAGAGCTTTTCGAAAGCAATTGGCCGAAGGAAGAGGAAAACAGCAAGCACCCGGTTGGTGTCACCTTGTTTAGATGCTTTTGGAAGCGCATAGCTTTCACTGGCTTCCTTGCAGTTGTAAGACTTGCGGTTATGTACGTTGGTCCAATGCTTATTCAGAGTTTCGTTGACTTCAGCGCAAGGAAAGACAGCACCCCTCTTGAAGGACTTATTCTTATTCTGATCCTGTTTTTTGCAAAATCAGTCGAGGTCCTCGCTGTGCACCAATTCAACTTCAACTCTCAGAAACTAGGCATGTTAATCCGTTCCAGCATCATAACTTCCGTGTACAAGAAGGGTTTAAGGCTTTCAAGTTCTTCGAGGCAGTCTCATGGCGCTGGCCAGATTGTGAACCACATGGCCGTTGATGCACAACAGCTCTCAGATTTGATGTTGCAGTTTCATCCCATATGGTTGATGCCACTACAAGTAACTGCAGCTTTGGCACTTATCTACAGCAGTATAGGCGTGTCAGCGTTTGCAGCGCTTCTTGGAGCCAGTTTGGTGTTTGTTTTCACTCTCATTCGCACCAAGAGGAGCAATACATTCCAGTTCAGGATAATGAAGGGCCGTGACCTTAGGATGAAGGCCACGAATGAGTTGCTTAACAACATGCGTGTCATCAAGTTCCAAGCGTGGGAGGAGTACTTTGGGAACAAGATTCAGCAGTTTCGCGAAGCCGAACACGGTTGGATTGGAAAGTTCTTGTACTACTTTGCCCTTAACATGGCGGTTCTGACGTCTGCTCCTTTGTTGGTATGTGTTCTCACATTTGGAGCTTCTGTTCTTCAGGGTGTTCCTCTGAACACTGGCACAGTGTTCACAATCACTTCAGTGATCAAGATTTTGCAAGAGCCTGTGAGGACCTTCCCTCAGGCTCTCATATTGATTTCCCAAGCGATGATATCTCTTGGGAGGTTGGATGAGTTCATGATGAGCAAGGAAATGGATGAGGGTGCAGTGGAGAGATTGGATGGATGTGATGGTGACACCGCTGTGGAGATCAAAAACGGGGAATTCTCCTGGGATGATGCGGATGCAAATGTGGCTCTGAAAGTTGAAGAGTTGGAGATCAAGAGAGGAGAACATGCTGCTGTTGTGGGAACAGTTGGGTCAGGCAAGTCTTCGTTACTGGCTTCTTTGTTAGGGGAAATGATCAAGATATCAGGAAAGGTTACAGTTTGTGGGTCAATAGCCTATGTAGCACAGACATCGTGGATTCAGAATGCAACCATCCAAGACAACGTATTGTTTGGTTTACCAATGAACAAAGAGAAGTACGAAGAAGCTATAAGAGTGTGTTGCCTAGAAAAGGATCTTGAAATGATGGAATATGGAGACAAAACTGAGATTGGAGAAAGGGGTATTAACCTCAGTGGTGGCCAGAAGCAACGTATACAACTTGCCAGAGCTGTATACCAAGACTGTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCACAAACTGGGTCATTCATTTTCAAGGAATGTATCATGGGGGCTCTAAAAAACAAGACCATTTTACTTGTAACCCACCAAGTTGACTTCTTGCATAACGTTGACTGTATTATGGTGATGAAAGAAGGGAGAATCGTGCAAAGTGGGAAGTATGATGAACTTCTCAATGCAGGCCTGGATTTTGGTGCACTTGTGGCTGCTCATGAATCCTCTATGGAGATTGTAGAGTCTAGCGATAAAGGTGGTGATGATTCGACTCAGTCTCCGAAACTGGCTCAACTCCCTTCAAAAGAAAAGGAAAAAGCAGGTGAAAAGCAACCTCAAAATCAGGCTAAGTCAGCTAACACCTCTGCAAAGCTCATTGAAGATGAGGAAAGAGAAACTGGTCATGTGAGTCTTAAAGTGTACAAACACTACTTCACTGAAGCATTTGGGTGGTGGGGTGTTGTACTGATGCTGGCGTTGTCTATAGCATGGATGTTGTCCTTCTTGGCGGGTGATTACTGGCTAGCAATTGGAACTGCAGAAGGCACTAACTTTGCTCCTGCTACATTCATCACCGTGTATGCTTGCATAGCAGTTGGTGTAGCTGTTGTTGTGATGGCAAGATCAATCTTATTCACTTATTGGGGTCTAAAGACATCTCAAAGCTTCTTCAGTGGAATGCTTCAAAGCATCCTGCATGCACCAATGTCATTCTTTGACACCACTCCCTCTGGCAGAATTTTGAGTCGTCAATATTACCTTGCATCATCTCGGGAATTGACTCGCCTTGATTCTATCACCAAAGCTCCTGTGATTCACCACTTTTCAGAATCCATTGCTGGTGTTATAACCATTCGTGGCTTCGGAAAACAGAACGAATTTTGCCAAGAAAATATTGATAAAGTCAATGCTAGTCTGAGAATGGATTTCCACAACAACGGGGCCAATGAATGGCTTGGTTTTCGCTTGGACTACATGGGAGTGGTTTTCCTTAGCATTAGCACTGTTTTTATGATCTTTCTCCCAAGTGCTATCGTGAGGCCAGAATATGTTGGTTTGTCTTTGTCCTATGGTTTATCACTCAGCAGTATTTTGTCATTGACTATAACAATGAGTTGCAGTGTCGAGAACAAAATGGTTTCAGTCGAGAGAATAAAGCAGTTCACCAACCTTCCCTCAGAAGCACCATGGAAAATAGCTGATAGCTCTCCTCCTAATAATTGGCCCAGCCTTGGCTGCATTGAGTTAAACAATTTGCAGGTTCGGTATCGGCCAAATACTCCTCTGATTCTCAAAGGAATCTCTCTCACCATTCAAGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACAGGGAGTGGGAAATCAACCCTCATTCAAGTGTTATTTAGGTTGATTGAGCCTTCAGCTGGGAAAATAATTATTGATGGGATCAATATTTGTACTGTTGGCCTTCATGATCTGAGATCTCGATTTGGAATTATCCCTCAAGATCCTGTTCTCTTTCAAGGAACAGTACGAAGCAACATTGATCCCCTTGGACTGTATTCAGAAGAAGAAATCTGGAAGAGCCTAGAACGTTGCCAACTGAAAGATGTGGTGGCTGCAAAACCTGAGAAACTCGAGGCTTCAGTGGTGGATGGTGGAGACAATTGGAGTGTGGGGCAAAGACAGCTTCTGTGCTTGGGAAGGATCATGCTAAAACGCAGCAAAATACTGTTCATGGATGAGGCAACAGCATCTGTTGATTCACAAACTGATGCTGTAATACAGAAAATCATCAGAGAGGATTTTGCAGATCGTACAATTATCAGCATTGCTCACAGAATACCTACAGTCATGGACTGTGACAAAGTTTTAGTCATTGATGCAGGGCTTTCAAAAGAATATGACAAGCCATCACGTTTGCTAGAAAGGCCTTCACTTTTTGCAGCATTGGTTAAGGAGTACTCCAATAGATCTGCATAA 4371 0.4379 MSPRFQMLHFNMSSSSPPSWLTSPSCSTLGIDSSSPTAFLVVQWLRFLLLSPCPQRLLLSVFDFIFLLIVLAFAAVKLYSRLTSRHTSSSSITKPLLQEKRSHYKVTFWFKLTFFVTTLLLAAYTVLGVLAFQTSLSSWVVIEALFRLFQAVANILVVILLVHENKFKASEHPLSLRMYWIANMVVSCLFAISAVVRFVVVDGARLELSLRVDDVFSLVNLPFSAFLFVVAMKGVTGIQVIRTSDEVTAYQCLSNERNLSPYAHSSIFSKIVWLWINPLLNKGYQTPLKLDDVPSLPLDFRAEKMSELFESNWPKEEENSKHPVGVTLFRCFWKRIAFTGFLAVVRLAVMYVGPMLIQSFVDFSARKDSTPLEGLILILILFFAKSVEVLAVHQFNFNSQKLGMLIRSSIITSVYKKGLRLSSSSRQSHGAGQIVNHMAVDAQQLSDLMLQFHPIWLMPLQVTAALALIYSSIGVSAFAALLGASLVFVFTLIRTKRSNTFQFRIMKGRDLRMKATNELLNNMRVIKFQAWEEYFGNKIQQFREAEHGWIGKFLYYFALNMAVLTSAPLLVCVLTFGASVLQGVPLNTGTVFTITSVIKILQEPVRTFPQALILISQAMISLGRLDEFMMSKEMDEGAVERLDGCDGDTAVEIKNGEFSWDDADANVALKVEELEIKRGEHAAVVGTVGSGKSSLLASLLGEMIKISGKVTVCGSIAYVAQTSWIQNATIQDNVLFGLPMNKEKYEEAIRVCCLEKDLEMMEYGDKTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAQTGSFIFKECIMGALKNKTILLVTHQVDFLHNVDCIMVMKEGRIVQSGKYDELLNAGLDFGALVAAHESSMEIVESSDKGGDDSTQSPKLAQLPSKEKEKAGEKQPQNQAKSANTSAKLIEDEERETGHVSLKVYKHYFTEAFGWWGVVLMLALSIAWMLSFLAGDYWLAIGTAEGTNFAPATFITVYACIAVGVAVVVMARSILFTYWGLKTSQSFFSGMLQSILHAPMSFFDTTPSGRILSRQYYLASSRELTRLDSITKAPVIHHFSESIAGVITIRGFGKQNEFCQENIDKVNASLRMDFHNNGANEWLGFRLDYMGVVFLSISTVFMIFLPSAIVRPEYVGLSLSYGLSLSSILSLTITMSCSVENKMVSVERIKQFTNLPSEAPWKIADSSPPNNWPSLGCIELNNLQVRYRPNTPLILKGISLTIQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDGINICTVGLHDLRSRFGIIPQDPVLFQGTVRSNIDPLGLYSEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVIQKIIREDFADRTIISIAHRIPTVMDCDKVLVIDAGLSKEYDKPSRLLERPSLFAALVKEYSNRSA* 1457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0132 1456 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1052 1456 - -
Vra5g0132 1456 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 74 1052 - -
Vra5g0132 1456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 870 IPR027417 -
Vra5g0132 1456 SUPERFAMILY ABC transporter transmembrane region 953 1196 IPR036640 GO:0005524|GO:0016021
Vra5g0132 1456 Gene3D - 631 894 IPR027417 -
Vra5g0132 1456 Gene3D ABC transporter type 1, transmembrane domain 323 630 IPR036640 GO:0005524|GO:0016021
Vra5g0132 1456 Gene3D ABC transporter type 1, transmembrane domain 1053 1197 IPR036640 GO:0005524|GO:0016021
Vra5g0132 1456 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 337 617 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g0132 1456 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1216 1450 IPR003439 GO:0005524
Vra5g0132 1456 CDD ABCC_MRP_domain2 1214 1434 - -
Vra5g0132 1456 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 651 874 IPR003439 GO:0005524
Vra5g0132 1456 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 953 1052 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g0132 1456 CDD ABC_6TM_ABCC_D2 956 1191 IPR044726 GO:0140359
Vra5g0132 1456 Pfam ABC transporter transmembrane region 338 605 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g0132 1456 Pfam ABC transporter transmembrane region 972 1052 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g0132 1456 SMART AAA_5 1242 1427 IPR003593 -
Vra5g0132 1456 SMART AAA_5 678 851 IPR003593 -
Vra5g0132 1456 CDD ABC_6TM_ABCC_D1 338 625 IPR044746 GO:0140359
Vra5g0132 1456 SUPERFAMILY ABC transporter transmembrane region 328 625 IPR036640 GO:0005524|GO:0016021
Vra5g0132 1456 CDD ABCC_MRP_domain1 651 851 - -
Vra5g0132 1456 Gene3D - 1200 1450 IPR027417 -
Vra5g0132 1456 Gene3D ABC transporter type 1, transmembrane domain 897 1052 IPR036640 GO:0005524|GO:0016021
Vra5g0132 1456 MobiDBLite consensus disorder prediction 882 927 - -
Vra5g0132 1456 Pfam ABC transporter 1233 1381 IPR003439 GO:0005524
Vra5g0132 1456 Pfam ABC transporter 673 802 IPR003439 GO:0005524
Vra5g0132 1456 ProSitePatterns ABC transporters family signature. 776 790 IPR017871 GO:0005524
Vra5g0132 1456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1449 IPR027417 -
Vra5g0132 1456 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1054 1179 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g0132 1456 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1052 1456 - -
Vra5g0132 1456 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 74 1052 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0132 Vra-Chr5 1101900 1108630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0132 636 879 Calmodulin-binding Proteins AT2G36910 31.439 2.80e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0132 - K05665 vra:106762025 1969.51