Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0128 ATGGAAGGTAACAAGGACGAAGCATTGCGCTGCGTTCGGATCGCCGAGGAAGCAATCGCGTCGGGGAACAAAGACCGCGCCGTCAAATTCCTCAGAATCGCTAAGCGACTAAACCGCGATTTGCCGATTCAATCATTGCTACAGAAGTGCGAGGGTCTTGATTCTCAGTCCTCCGCCACTGCCTCTCATGGTGCGCAGGCCACTGGTACTTCTTCGCGGGGCGAACGTTTGAACGGGGAGAGGAGTCACGCGAGTTACACGGAGGAGAACGTTCGGTTGATTAGGGAAATCAAAGGAAAGAGCGACTACTACGCGATACTTGGATTGGAGAAGAGCTGCTCCGTCGAAGAGATTCGGAAAGCGTATCGGAAGCTCTCGCTGAAGGTTCATCCCGATAAGAACAAAGCGCCCGGCTCAGAAGACGCGTTCAAGAAAGTCTCGAAAGCTTTCAAGTGTTTGAGCGATGACGGTTCTAGAAGGATGTATGACCAGACCGGAACCGTCGATGATTTCGACCACGGCGAGGTGAACGCCTTCCGGCGGAGGAGGAGAAGGACGACGACAGCAACCACGACGCGCGATTTCTTCGAAGAAGAGTTCGATCCTGACGAAATATTTAGGGCTTTCTTCGGACACTCCGATGTGTTTGGGAGAAACCATGTTTTCAGGCCCCGCGGCATGGGGAATCCCCATAGGACCGAGGTTAATGATGGATCGGGAGGGAGGCATCACAATGTTATGCTTCTGATTCAGCTTTTGCCGCTTTTGATTATTATTCTTCTCGCGTACTTGCCGTTTTCTGAGCCTGAGTATTCCTTGCACAAACATTACAACTACCAGATTCCGAAAACGACTGAGCTGCACGGGGTGCAGTTCTTCGTGAAATCGCAGGAGTTTGAAGGGAATTATCCGGTGGGAAGTGATGCTCGTGTGGCGGTTGAGGAAAGTGTGCTAAAGGATTACAGGAGTATGCTTCGGAGATACTGTCAGGTGGAGATGCAGAGACGGAGTTGGAATAGGAATCTGCCTACTCCTCACTGTGATAAGCTGCAGAACTTTGCAGTCATGGCATGA 1074 0.514 MEGNKDEALRCVRIAEEAIASGNKDRAVKFLRIAKRLNRDLPIQSLLQKCEGLDSQSSATASHGAQATGTSSRGERLNGERSHASYTEENVRLIREIKGKSDYYAILGLEKSCSVEEIRKAYRKLSLKVHPDKNKAPGSEDAFKKVSKAFKCLSDDGSRRMYDQTGTVDDFDHGEVNAFRRRRRRTTTATTTRDFFEEEFDPDEIFRAFFGHSDVFGRNHVFRPRGMGNPHRTEVNDGSGGRHHNVMLLIQLLPLLIIILLAYLPFSEPEYSLHKHYNYQIPKTTELHGVQFFVKSQEFEGNYPVGSDARVAVEESVLKDYRSMLRRYCQVEMQRRSWNRNLPTPHCDKLQNFAVMA* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0128 357 MobiDBLite consensus disorder prediction 57 75 - -
Vra5g0128 357 Pfam DnaJ domain 102 163 IPR001623 -
Vra5g0128 357 CDD DnaJ 102 155 IPR001623 -
Vra5g0128 357 Gene3D DnaJ domain 99 220 IPR036869 -
Vra5g0128 357 SUPERFAMILY Chaperone J-domain 98 169 IPR036869 -
Vra5g0128 357 Pfam Domain of unknown function (DUF1977) 267 337 IPR015399 -
Vra5g0128 357 SMART dnaj_3 101 158 IPR001623 -
Vra5g0128 357 PRINTS DnaJ domain signature 104 122 IPR001623 -
Vra5g0128 357 PRINTS DnaJ domain signature 122 137 IPR001623 -
Vra5g0128 357 PRINTS DnaJ domain signature 138 158 IPR001623 -
Vra5g0128 357 PRINTS DnaJ domain signature 158 177 IPR001623 -
Vra5g0128 357 PANTHER AT29763P-RELATED 1 355 - -
Vra5g0128 357 PANTHER CHAPERONE PROTEIN DNAJ 49 1 355 - -
Vra5g0128 357 MobiDBLite consensus disorder prediction 57 84 - -
Vra5g0128 357 ProSiteProfiles dnaJ domain profile. 102 166 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0128 Vra-Chr5 1065112 1071565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0128 97 163 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.620 2.11e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0128 K09518 - gmx:100820432 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0128 5 1065112 1071565 Vra5g0128 5 1065112 1071565 ECH