Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0113 ATGGCTCAAGAAGGAGGAAACGAAGCCATACCAAAATTCAAAGAAAGAAGCCCAATCCCACAAGATTTCGATGAAAAGAGTTACAGCCTCAGCGGAAAAATCATGCTTTCTGCCATCGTTCTACTCTTCTTCATCGTCATTTTAATGCTCTGTCTCCACATCTACGCCCGCTGGTACCTCAGACGCGCGCGCCGCCGTCAGCTCCGCCGCCACCGCGAGCTCCGCGGAATACAGATCGGGATCGGGTTCTACATCGCCGACACTCCCGCCGCGGTGTCCCGCGGCCTCGACGCTGCTGTCCTCGCCTCGCTACCCGTGTTCACGTACGACCCCAAGGCACACCCGGAAAACGCGCCGGAATGCGCGGTTTGCTTGTATGAGTTCGAACTGGGAGAATCGGGTCGGGTCTTACCAAAGTGTAACCACAGCTTCCACACAGACTGCATCGACATGTGGTTTCACTCGCACGACACGTGTCCGCTTTGTCGCGCACCGGTCGAGCGCGCGGCCGAACCGGAGGTTGTTATAACTGTTAGCGAACCGGAATCCGGTTCGGGGGAGAACCTAACCGGTTCTAACTCTTGTCCTTCCTCTTCGGCTGGCTCTAGGAAATCGTCGTTGGTTGGTGTGACCATTGAGGTGCCTCCGCGGGATGAGAATTTGCGTGACGAGAATACGCCGTCGTTTCGGTCGCCGATGAGTCGCATGTTATCGTTTACGAGGATTCTTAGCAGGGAACGGAGGGGAAACACGTCCCCGTCGTCTAGCGGCGGTGATTGTAGCTCCGCCGCCCAGTGCGAGGCCGAGGTGGGCGAGAGGAGACCCAGTGAGTCTTGA 837 0.5723 MAQEGGNEAIPKFKERSPIPQDFDEKSYSLSGKIMLSAIVLLFFIVILMLCLHIYARWYLRRARRRQLRRHRELRGIQIGIGFYIADTPAAVSRGLDAAVLASLPVFTYDPKAHPENAPECAVCLYEFELGESGRVLPKCNHSFHTDCIDMWFHSHDTCPLCRAPVERAAEPEVVITVSEPESGSGENLTGSNSCPSSSAGSRKSSLVGVTIEVPPRDENLRDENTPSFRSPMSRMLSFTRILSRERRGNTSPSSSGGDCSSAAQCEAEVGERRPSES* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0113 278 MobiDBLite consensus disorder prediction 179 278 - -
Vra5g0113 278 CDD mRING-H2-C3H2C2D_ZSWM2 120 163 - -
Vra5g0113 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 171 IPR013083 -
Vra5g0113 278 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Vra5g0113 278 MobiDBLite consensus disorder prediction 226 262 - -
Vra5g0113 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 26 215 - -
Vra5g0113 278 SMART ring_2 121 162 IPR001841 -
Vra5g0113 278 Pfam Ring finger domain 120 163 IPR001841 -
Vra5g0113 278 SUPERFAMILY RING/U-box 101 168 - -
Vra5g0113 278 PANTHER RING-H2 FINGER PROTEIN ATL64 26 215 - -
Vra5g0113 278 MobiDBLite consensus disorder prediction 181 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0113 Vra-Chr5 930612 932056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0113 26 272 Rapid Response to Elicitors AT3G16720 50.181 1.74e-65 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0113 - - gmx:100791545 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0113 5 930612 932056 Vra5g0113 5 930612 932056 ECH
Vra7g2824 7 48413935 48415211 Vra5g0113 5 930612 932056 PCT