Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0111 ATGGGTGAAGGTAGGAATCGCAATCCAAACAAAAGGTTCGCCATTCTTGGCGTGTCTTCGATCCTCCTTGTGGCTGTGGTGGCTGTGATAGCTGTTACTTTAAACCAAGGAGAAGTAGCTGAAGATGAAGCAGCTCGTATCGCTAGTTCTCAAAGGACAAGTGTAGACATACTTTGCCATTCAACAGAATACTCGAAAACCTGCAAGAAAAGCCTTAAACATGTAGCTGCTAACGGAACCACAGACACAAAGACTCTGGTGAAAGCTGCGATCAATGCCACAGCGGTGGAACTTTTGAGCCACATAAGGAACTCATCCCTTTATAAAGACTTGGGGAAGGACAACATGACAAGACAAGCCGTGGATATTTGTAAGGAAGTGTTTCAGTATGCGATTAATGGCATTCAGAAATCTGCTGATACAATAGACAAGTTTGAATATGGGAAGTTGAGTGAATATATTTATGACCTAAGGGTTTGGGTCGCGGGGAGTCTCACTCACCAGCACACGTGCTTGGAAGGCTTTGTGAACACGAGCACGGAGGCTGGTGTGAAAATGACTAAGATTTTGAATACCTCTTTGGAGCTTAGCAGCAATGCGTTGGATATGTTGAACGTGATCTCTGGTGTGATGAAGGACCTTAACATGAGCTCATTTGGCAATAGGAGGCTTCTCTCTGAGGACAAACCAACCTTGCATGATTATCCTTCGTGGGTCACTGAAGAAAAACGGCGTCTTCTTGAGATGGGAACTGAAAATCCTGATGCAGTTGTGTCCCAAGATGGCTCTGGCCAATTTAAATCTATCAATGAAGCTCTTCAGACCGTCCCTGCTAACAATGAAAAACCTTTTGTGATTTACGTCAAAGAAGGTGTGTACAGGGAAAATGTTGAAATGTCTGTACTAATGACTCATGTCACAATCATCGGAGATGGTCCAACAAAGACCAGATTCAGTGGTAGTTTAAACTACGATGATGGCGTCCAAACCTACAAAACTGCTACTTTTGCGGTTAATGCTCCAAACTTCATGGCGAAGGATGTCGGGTTTGAGAACACGGCAGGGTCTGAGAAACATCAAGCAGTGGCACTGCGAGTAACAGCAGACCAAGCTGTGTTTCTGAATTGCCACATGGATGGGTTCCAAGACACCCTATATGCTCAGTCACAACGCCAATTCTACCGTGATTGCTCCGTGACTGGGACGGTTGATTTTGTGTTTGGAGATGCCGTTGGAGTGTTCCAAAACTGCACGCTAATTGTGAGAAAACCGTTGGGCAAACAACGGTGCATGGTGACAGCTGGTGGGAGAGTGAAATCCGACAGCCCCACTGCCCTAGTTTTCCAAGGTTGTGTGTTCACAGGAGTGCCGGAAATGTTTAGCATGCCACAAAAGGTAACATACCTAGGAAGGCCATGGAGGGCATACTCTAAGGTAATCATCATGGACTCCCAACTTGACGACATCTTCATACCAGAAGGGTACATGGGGTGGATGGGAACTGATTTCATGGACACTTGTACATACTTAGAGTACAATAACAGAGGCACTAATGCTGACACTTCACTTAGAGTTAAATGGCCTGGTGTTAGGAGTCTAACAGCAGAAGAAGCAGCTGATTATTATCCTTCCAGGTTCTTTGAACTTTATTCTCCAAATGATGGTAATTGGATTGTTAGATCTAGGGTACCCTACAGTCTTGGCCCTTCTCCCCAGTAG 1719 0.4514 MGEGRNRNPNKRFAILGVSSILLVAVVAVIAVTLNQGEVAEDEAARIASSQRTSVDILCHSTEYSKTCKKSLKHVAANGTTDTKTLVKAAINATAVELLSHIRNSSLYKDLGKDNMTRQAVDICKEVFQYAINGIQKSADTIDKFEYGKLSEYIYDLRVWVAGSLTHQHTCLEGFVNTSTEAGVKMTKILNTSLELSSNALDMLNVISGVMKDLNMSSFGNRRLLSEDKPTLHDYPSWVTEEKRRLLEMGTENPDAVVSQDGSGQFKSINEALQTVPANNEKPFVIYVKEGVYRENVEMSVLMTHVTIIGDGPTKTRFSGSLNYDDGVQTYKTATFAVNAPNFMAKDVGFENTAGSEKHQAVALRVTADQAVFLNCHMDGFQDTLYAQSQRQFYRDCSVTGTVDFVFGDAVGVFQNCTLIVRKPLGKQRCMVTAGGRVKSDSPTALVFQGCVFTGVPEMFSMPQKVTYLGRPWRAYSKVIIMDSQLDDIFIPEGYMGWMGTDFMDTCTYLEYNNRGTNADTSLRVKWPGVRSLTAEEAADYYPSRFFELYSPNDGNWIVRSRVPYSLGPSPQ* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0111 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Vra5g0111 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Vra5g0111 572 Pfam Plant invertase/pectin methylesterase inhibitor 55 203 IPR006501 GO:0004857
Vra5g0111 572 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Vra5g0111 572 Pfam Pectinesterase 255 547 IPR000070 GO:0030599|GO:0042545
Vra5g0111 572 SMART PMEI_2 50 203 IPR006501 GO:0004857
Vra5g0111 572 PANTHER PECTINESTERASE 8 570 - -
Vra5g0111 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 42 207 IPR006501 GO:0004857
Vra5g0111 572 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Vra5g0111 572 SUPERFAMILY Pectin lyase-like 253 547 IPR011050 -
Vra5g0111 572 CDD PMEI-like_3 58 209 - -
Vra5g0111 572 Gene3D - 253 569 IPR012334 -
Vra5g0111 572 PANTHER PECTINESTERASE 8 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0111 Vra-Chr5 919219 921291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0111 11 568 Carbohydrate Esterase AT3G05610 41.770 7.27e-164 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0111 K01051 - gmx:100784682 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2823 7 48406872 48409209 Vra5g0111 5 919219 921291 PCT