Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0108 ATGTGTGGAGGTGCAATTATTTCCGACTTCATTGGTGTCAAGCGTGACCGTAACGTCGCCGCGGAGCAACTGTGGTCCGAGCTAGACCCTTTCTCTGACCTCCTCGGCTTCGACGCCACCACCATCACCACTTCCAAACGCCAACCACCCTTCCCCGTAATTTCAGACAAAAAGGTGGAATCATGTGCCAAGAAGAAGAAAAGCGTGGATGCAGGGAAGAAGACTGAGCGTGCTCGGAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGGAAATGGGCTGCAGAAATAAGGGACCCACACAAGGGTGTCCGCGTTTGGCTCGGCACCTTCCCCACCGCCGAGGAAGCCGCCAGAGCCTACGACGACGCCGCCAAACGCATCCGTGGTGACAAGGCCAAACTCAACTTCCCCGACGACACTCCACCACCCTCCAAGAAGCGCTGCCTCAGCCCCGACCTCCCTCAACAGAGCAGCTCCTCTTCCACCGCACCACCGCCTTCCGCCGACTCCTACAGCGGAAACAGCAGCGGAGGAGAGGAACTCGACCTCAAACAACTTGAACTCTTTCTTGGCTTAGAGAATGAGCAGCCTCTGCCCAACAATGGTGTGGAGTGGGAGAACGGTTACATGATGGATGACTTGTGGATGTTCGACGACGTCGTCGTGGCCAACCGTAATCTAGTTTATTAG 696 0.5603 MCGGAIISDFIGVKRDRNVAAEQLWSELDPFSDLLGFDATTITTSKRQPPFPVISDKKVESCAKKKKSVDAGKKTERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDDAAKRIRGDKAKLNFPDDTPPPSKKRCLSPDLPQQSSSSSTAPPPSADSYSGNSSGGEELDLKQLELFLGLENEQPLPNNGVEWENGYMMDDLWMFDDVVVANRNLVY* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0108 231 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Vra5g0108 231 MobiDBLite consensus disorder prediction 152 180 - -
Vra5g0108 231 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Vra5g0108 231 PANTHER DNA-BINDING DOMAIN 1 164 IPR044808 GO:0003700|GO:0009873
Vra5g0108 231 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Vra5g0108 231 PANTHER EREBP TRANSCRIPTION FACTOR 1 164 - -
Vra5g0108 231 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Vra5g0108 231 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Vra5g0108 231 MobiDBLite consensus disorder prediction 133 180 - -
Vra5g0108 231 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Vra5g0108 231 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Vra5g0108 231 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0108 Vra-Chr5 866296 868456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0108 1 225 AP2-EREBP Transcription Factor Family AT3G16770 45.385 4.27e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g0108 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0108 K09286 - gmx:100779626 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0108 5 866296 868456 Vra5g0108 5 866296 868456 ECH
Vra7g2817 7 48376865 48377668 Vra5g0108 5 866296 868456 PCT