Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0104 ATGGGACAAGAATCAGATCACAAAACCCAGTTAGTGTTGGAGATTTGCTCCATTTCCACACGTTCACTTGGCTGTGTTCATACACTTCTCTCAAACCACCCTTCTAAGCCACCTTTCATAGATTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGTTGGTCACCATCCGCCAGCAATACCATAAACTTGCCCTGCAACTTCATCCGGACAAGAACAAACATCCAAAGGCTGAAATTGCTTTCAAACTTATATCTGAGGCATATATGTGTCTGTCTGATGCTGCAAAAAGGAAAGGTTTTGACTCAAAAAGATCTAAAAATTTCTGCTTTGAGTGCAATAGAATTCCATGTACATCTAAAAAGGTCCCTTTCCCTGGCAATTCCAATGGGTCGACACGATCTTACAAAGTTCGGAGAAATATTAAAGAGATGAGAGAAATGTTAAAGGAGGAGGCTAAGGTTATAGAGAAGTGTCTGCGAGCAAATTTAATGTCAAAGAAAGAGTCTCCACTGTACAATCCTGCAGATTACAGACATGGAAGCAGATTCCTGCATAAAGTTGAGAGAGAAGTTCCTGTTTTCAATCCAATGAAATACTTGTACCAAGGATATCCTCATCTCAGAGATCATGTTCATCACAATCTGGAGACATGTTGGTGCTTTGATACACGAAATCTTGTGCAGAATCACAAGAGAGAAGCTAAGTATGACTCACCAGTGTTTGAGGTCAGATCGCAGAATAAATTTCCTTATCAGCCGTCATGA 768 0.4049 MGQESDHKTQLVLEICSISTRSLGCVHTLLSNHPSKPPFIDWYCILGVEENAGLVTIRQQYHKLALQLHPDKNKHPKAEIAFKLISEAYMCLSDAAKRKGFDSKRSKNFCFECNRIPCTSKKVPFPGNSNGSTRSYKVRRNIKEMREMLKEEAKVIEKCLRANLMSKKESPLYNPADYRHGSRFLHKVEREVPVFNPMKYLYQGYPHLRDHVHHNLETCWCFDTRNLVQNHKREAKYDSPVFEVRSQNKFPYQPS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0104 255 PRINTS DnaJ domain signature 43 61 IPR001623 -
Vra5g0104 255 PRINTS DnaJ domain signature 61 76 IPR001623 -
Vra5g0104 255 PRINTS DnaJ domain signature 77 97 IPR001623 -
Vra5g0104 255 Gene3D DnaJ domain 40 158 IPR036869 -
Vra5g0104 255 SMART dnaj_3 40 97 IPR001623 -
Vra5g0104 255 Pfam DnaJ domain 41 102 IPR001623 -
Vra5g0104 255 CDD DnaJ 41 94 IPR001623 -
Vra5g0104 255 PANTHER BNAC03G44070D PROTEIN 4 248 - -
Vra5g0104 255 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 248 - -
Vra5g0104 255 SUPERFAMILY Chaperone J-domain 31 105 IPR036869 -
Vra5g0104 255 ProSiteProfiles dnaJ domain profile. 41 105 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0104 Vra-Chr5 828649 829797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0104 23 103 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.889 3.17e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0104 - - gmx:100778573 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0104 5 828649 829797 Vra5g0104 5 828649 829797 ECH
Vra7g2812 7 48340456 48341951 Vra5g0104 5 828649 829797 PCT