Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0092 ATGTCGGAAGGAACCAGTTTGGTGCTGGAATCATCTGAAAATGGTACAGATTTGTCTCAGGAAGACATTGACACCATTGAGGAAACAGCAGAGGAAACGATTTTGTCAAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTTGTATCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAGCAGTGTGGCTTTTCAATTAGAAGACACCGAACTCGAGGGAAAGATGGGGTTGGAAGGGGAGTTACAAGGAGGGATTTCACTTGCCATCGTGGTGGTTATCCCCAGATTAAACCTTCTCATGACGGAAAGGTGCAAAGGAACCGCAAATCTTCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAGGGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACACACATAATCATGAGCTATTAAAATCCAATGAGGTGCGCCTTCTTCCAGCCTATTGTCCGATATCTCCTGATGACAAGAGTCGAATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAGATGTTAAGACTGATGGAGCTGGAGAAAGGGGTCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACTTGCTGCAGTCTTTCAGAATTGTGGACAGAGATAATGATGCCATTGATTTGATTACTATGTGCAAGAGGTTAAAGGATGAAAACCATAACTTCAAATATGAATTCAAAATAGATAGTAATAACAGGCTTGAACATATTGCATGGTCGTACAGTTCATCCATTCAATCATATGAGGCATTCGGCGATGCTGTAGTTTTTGATACCACCTACCGAGTAGATGCTTATGACATGCTGTTGGGATGTTGGCTTGGTGTGGACAATAACGGCATGCCTTGTTTCTTTAGTTGCGCACTTCTACGGGATGAAAACATACAATCTTTCTCATGGGCTCTCAAGGCTTTCTTGGGGTTCATGAAAGGAAAGGCTCCTCAAACAATATTGACGGATCACAACACTTGGCTGAAAGAAGCTATTGCAGTTGAATTGCCTGAAACCAAACATGCTTTTTGTATATGGCATATACTTTCCAAGTTCTCTGATTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAGTTCCACCGGCTCTACAATTTGGAACTGGTGGAAGATTTTGAAGAAGGCTGGCGGCAAATGGTTGACAAGTATGGACTCCACACAAATAAACATATCATTAGCCTATATTCATTGAGGACATTTTGGGCTTTACCATTCTTGAGGCGCTACTTCTTTGCAGGATTGACCATTACATCTCAGTCTGAGTCCATTAATGCTTTCATCCAACGTTTCTTGAGTGCCCAATCTCAATTACACCGCTTTGTGGACCAAGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGAGCGAAGCAAAAGATGCAAAGGAAACTTCAAAAAGCGTGCCTCAAAACTGGTTCACCTATTGAATCCCATGCTGCCACTGTACTTACTCCCTATGCCTTGAATAAACTTCAGGAAGAGCTAGTTATGGCGCCACAATATGCATCCTTCCTGGTTGATGAAGGTTGTTTCCAGGTCAGACACCACTCTCAGACAGATGGAGGATGCAAAGTATTTTGGGTTCCTTGTCAAGAGCACATAAGCTGCAGCTGTCATCTGTTTGAGTTTTCAGGCATCTTATGTAGACATGTGCTACGTGTCATGTCAACTAATAACTGTTTTCACGTCCCTGATCAATATTTACCAGGTCGATGGCGAGGCACTACTAGTTCATCTTCTGTTAACCACTTCCGGGGCACCACTAGTAGGGATCAGCCTGAAAGGATGCAACTTTTGGAATCCATGGTTTCAACATTTTTAGTGGAATCCATTGAAACTGAGGAACGTCTGGATGTTGCTTGCGAGGAAATTTCCATGGTGCTATCACGCATCAAAAGTCTTCCTAGGTCTCCACATGGGGTGAATGACATTGCATTTGGTTATCCATCAGATTCATTAATCCTCCCAGAGGTAGAAGATACTAATGGAATGATTCACAACTTTACAATCACAAATCCCCATGATTCTATCACTACAGGAAAGCTAAAGGAAAGAAGGGCCAGAGATGGAGTCGATCTCACAAGGAAGCGAAGACAGTTTTCTGCACCATTGTGTGCTCAATATGGACATGATCCATCTGATTGCTCAATAATGGCCACTGACAATATGAGTGGAGATGCATTAGGGTACTTGTAA 2280 0.4215 MSEGTSLVLESSENGTDLSQEDIDTIEETAEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSHDGKVQRNRKSSRCGCQAYMRIVKRADFDVPEWRVTGFRNTHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRIVDRDNDAIDLITMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTYRVDAYDMLLGCWLGVDNNGMPCFFSCALLRDENIQSFSWALKAFLGFMKGKAPQTILTDHNTWLKEAIAVELPETKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLELVEDFEEGWRQMVDKYGLHTNKHIISLYSLRTFWALPFLRRYFFAGLTITSQSESINAFIQRFLSAQSQLHRFVDQVADIVDFNDRAGAKQKMQRKLQKACLKTGSPIESHAATVLTPYALNKLQEELVMAPQYASFLVDEGCFQVRHHSQTDGGCKVFWVPCQEHISCSCHLFEFSGILCRHVLRVMSTNNCFHVPDQYLPGRWRGTTSSSSVNHFRGTTSRDQPERMQLLESMVSTFLVESIETEERLDVACEEISMVLSRIKSLPRSPHGVNDIAFGYPSDSLILPEVEDTNGMIHNFTITNPHDSITTGKLKERRARDGVDLTRKRRQFSAPLCAQYGHDPSDCSIMATDNMSGDALGYL* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0092 759 SMART 26again6 562 589 IPR006564 GO:0008270
Vra5g0092 759 MobiDBLite consensus disorder prediction 1 19 - -
Vra5g0092 759 Pfam MULE transposase domain 275 367 IPR018289 -
Vra5g0092 759 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g0092 759 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 739 - -
Vra5g0092 759 ProSiteProfiles Zinc finger SWIM-type profile. 554 587 IPR007527 GO:0008270
Vra5g0092 759 Pfam SWIM zinc finger 559 584 IPR007527 GO:0008270
Vra5g0092 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 739 IPR031052 GO:0006355
Vra5g0092 759 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0092 Vra-Chr5 756463 764567 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra5g0092 MULE 2.1e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0092 - - var:108322310 1518.83