Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0090 ATGTCCATGCATGTCCACGTCTTCGTCTTCTTAACGCTTGCCATATTTTCGGCAACGCCTTCGATGTCTCAGTCCCAAACCGCAGCTTCCTGCAATGGAATATTCGTCTCGTACGTCTACACTGGCGGCGAGCGGCTGCCGCCAAACGTTTCCGACGCGACGCAGCAGCCGTACCGGTTCGAGTCGAGGCTGACAGTGCTGAACAACGGGTTGGAGGAGCTCAAGTCTTGGAAGGTGTTCGTGGGCTTTCAACACAGCGAGTGGTTGGTTTCCGCGTCGAACGCCGTGCTCTCGGACGGTACAAGTATTCCCGGTGCAGTTGGGAACGGCACCGTGTTGAGCGGGTCGACGGTGAAGGATCTGAAGACGGCGGTGGCGACCGCCGGCGACTTGACCCAGATGCAGGTTCAGGTGGATATGGTGGGGAGCCTTCTTGGGGTGGCGCCACCTTCCGTGCCGATGCCTCGGTCGGTTACTTTGGCTAACGATGGATTCGTCTGCGGTCAACCCTCTGGAGAAGGGAGCAATGAAACTCATGTGTGTTGCAGAAGTGATCCCAGTTCCAGAACAAACGTGAGCACAGAGGTAGAGTTTCTACCCCGTGAGAAGGGTGATCTTAGCATCACATACGACATCATCAGAACCTACGATTCCAATTACTGGGCAGAGGTTACAATCGCAAACGACAATCCTTTGGGTCGTCTTGACAACTGGAGACTAAGCTGGGACTGGCAAAACGACGAGTTCATCTACACGACAAAGGGTGCATATCCATTAAAAGTGGATTCCTCTGACTGTGTTTTCGGTTCTCAAGGTAGTTTCTACAAGGAACTAGACTTTGCTAACGTCTTGAACTGTGAAAGAAGGCCAACCATAGTCGATCTTCCTCCCTCAAGGTTCAACGATTCAGAACTCGGTCAAATCCCATTCTGCTGCAGGAATGGAACCATCTTGCCACCAACAATGGACCCTAGCATGTCAACTTCAAGGTTCCAAATTCAAGTCTTCAAAATGCCACCCAAGATTAACCGCTCCACGCTCACACCTCCTCGTAACTGGGAGATAAAGGGTACCTTTAACCCTCACTATGAATGTGGCAACCCTATCAGGGTTAGTCCAACTGAATCCCCTGACCTCACTCACCCTCCATCAAACAAATCATCAATTGCAACTTGGCAAGTGGTCTGCAACATCACAAACACAGAACGTGAAACTCCCAAGTGCTGCGTTTCTTTCTCAGCTTATTACAATGAATCGGTTATCCCATGCAACACGTGTGCATGTGGATGTCCAAGTAATCCGGAGAGAACATGCAGCGCAGCTTCACAAGCTATGTTGCTTCCACCGGAGGCACTTCTTGTCCCTTTTGAGAACCGAACTCGGAAGGCCGTTTCTTGGGCTGAGATTAAACATTTACCTGTGCCTAGTCCCATGCCTTGTGGTGACAACTGTGGTGTGAGCATAAACTGGCACGTCGCCACGGATTACCGCAAAGGTTGGACCGCGAGGGTGACACTTTTCAACTGGGGTGACACCAGTTTTGCTGACTGGTTTGCTGCAGTGGAAATGGACAAAGCTGCGAAGGGGTTTGAGGAAGTGTACTCGTTCAACGGAAGCCTTTTGGAGAGTGTGGAGAACACGATCTTCATGCAAGGGAAAGAGGGGTTGAACTTTCTTGTGGCGGAAACTGATGGATCTAACCCTCGGAAAGATCCTAGGGTACCGGGGAAACAGCAATCAGTGATATCGTTTACGAAGAAGGAGACCCCTGGAATCAATGTGGTTGGTGGTGATGCGTTTCCAAGTAAAGTGTTCTTCAATGGGGAAGAATGCTCTCTTCCTTCGGTGTTACCAAGCAGTGTTGCGAGAACGGAGGTTCCATTGGCTACTACGATGTTCTTACTGATGTTGTTGTCGATCTTCTTCATGTCGCAATAG 1938 0.5052 MSMHVHVFVFLTLAIFSATPSMSQSQTAASCNGIFVSYVYTGGERLPPNVSDATQQPYRFESRLTVLNNGLEELKSWKVFVGFQHSEWLVSASNAVLSDGTSIPGAVGNGTVLSGSTVKDLKTAVATAGDLTQMQVQVDMVGSLLGVAPPSVPMPRSVTLANDGFVCGQPSGEGSNETHVCCRSDPSSRTNVSTEVEFLPREKGDLSITYDIIRTYDSNYWAEVTIANDNPLGRLDNWRLSWDWQNDEFIYTTKGAYPLKVDSSDCVFGSQGSFYKELDFANVLNCERRPTIVDLPPSRFNDSELGQIPFCCRNGTILPPTMDPSMSTSRFQIQVFKMPPKINRSTLTPPRNWEIKGTFNPHYECGNPIRVSPTESPDLTHPPSNKSSIATWQVVCNITNTERETPKCCVSFSAYYNESVIPCNTCACGCPSNPERTCSAASQAMLLPPEALLVPFENRTRKAVSWAEIKHLPVPSPMPCGDNCGVSINWHVATDYRKGWTARVTLFNWGDTSFADWFAAVEMDKAAKGFEEVYSFNGSLLESVENTIFMQGKEGLNFLVAETDGSNPRKDPRVPGKQQSVISFTKKETPGINVVGGDAFPSKVFFNGEECSLPSVLPSSVARTEVPLATTMFLLMLLSIFFMSQ* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0090 645 SUPERFAMILY Carbohydrate-binding domain 202 251 IPR008965 GO:0030246
Vra5g0090 645 PANTHER COBRA-LIKE PROTEIN 7 2 643 - -
Vra5g0090 645 Pfam COBRA-like protein 220 399 IPR006918 GO:0010215|GO:0031225
Vra5g0090 645 PANTHER COBRA-LIKE PROTEIN 7 2 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0090 Vra-Chr5 731365 734201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0090 31 626 COBRA Gene Family AT4G16120 63.062 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0090 - - gmx:100778971 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0090 5 731365 734201 Vra5g0090 5 731365 734201 ECH
Vra7g2799 7 48235485 48238067 Vra5g0090 5 731365 734201 PCT