Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0088 ATGTCGTTGAGGCCAAATGCTAGAACCGAGGTTCGTCGCAACCGTTACAAGGTGGCGGTGGATGCCGATGAGGGTCGTAGGAGGAGGGAGGATAACATGGTGGAGATCCGGAAGAGTAAGCGAGAAGAGAGCCTACAGAAGAAGCGCCGTGAAGGCCTTCAAGCTCAGCGACAGTTCCCCACTCCTCTTCAAGCCTCCATTGTCGAGAAGAAGTTAGAAAGCCTCCCTGCGATGGTTGCTGGAGTGTGGTCAGATGATAACAGCCAGCAGTTGGAAGCGACCACGCAGTTTCGGAAGCTGCTCTCGATTGAGCGCAGTCCCCCTATTGAGGAAGTTATTCAAGCTGGAGTTGTGCCTCGATTTGTGGAGTTTCTTCTTAGGGAGGATTTCCCTCAACTTCAGTTTGAAGCTGCATGGGCTCTCACGAACATAGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCAGTTCCGATATTTGTCAAGTTGCTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCGTTAGGAAATGTTGCTGGCGACTCCCCCAGGTGTCGTGATCTTGTTCTTGGCCATGGTGCCTTAATCCCACTGTTGGCCCAGTTGAACGAACATGCAAAACTTTCAATGTTGAGAAATGCAACATGGACCCTGTCAAACTTCTGCAGGGGCAAACCACAGCCGCCATTTGAGCAGGTCAGGGCAGCACTTCCAGCTCTTGAGCGATTAGTATTTTCCAATGATGAAGAGGTCTTAACAGATGCATGCTGGGCGCTATCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCTGTTATTGAGGCTGGTGTATGTGGCAGACTGGTGCAACTCCTTATGCACCCATCCCCTTCAGTGCTGATTCCTGCACTTCGCACAGTGGGAAATATTGTAACCGGAGATGATATTCAGACTCAGACTATCATCAATCATGGGGCTCTCCCGTGCCTTTTGAGTCTGTTGACACACAATCATAAGAAAAGCATCAAGAAAGAAGCTTGCTGGACCATATCGAACATTACAGCTGGAAACAGAGAACAGATACAGGCTGTTATTGAAGCTGGTCTGATTAGCCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAGGAAGCGGCATGGGCAATCTCAAATGCTACGTCTGGTGGTACCCATGAGCAGATCAAGTATTTGGTGAGCCAGGGTTGCATTAAACCACTCTGTGATCTGCTTGTTTGTCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGTCTTGAGAACATTCTGAAGGTTGGGGAAGCTGAAAAGAGTTTGGGTAACACTGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCGGAAGGATTGGAGAAAATTGAAAACCTGCAGAGTCATGACAACAATGAAATATATGAAAAGGCTGTTAAAATTCTTGAAACATACTGGTTGGAAGACGATGATGACACACTACCTACAGGAGATGGTGCTCAACCTGGTTTTAACTTTGGGAACGAGCTTCCAGTCCCATCTGGTGGATTCAACTTTAGTTGA 1590 0.473 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQRQFPTPLQASIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLLREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLMHPSPSVLIPALRTVGNIVTGDDIQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLISPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDDDTLPTGDGAQPGFNFGNELPVPSGGFNFS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0088 529 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Vra5g0088 529 Gene3D - 73 496 IPR011989 -
Vra5g0088 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Vra5g0088 529 PANTHER IMPORTIN ALPHA 2 521 - -
Vra5g0088 529 MobiDBLite consensus disorder prediction 23 53 - -
Vra5g0088 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Vra5g0088 529 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Vra5g0088 529 Pfam Atypical Arm repeat 457 501 IPR032413 -
Vra5g0088 529 PANTHER IMPORTIN SUBUNIT ALPHA 2 521 - -
Vra5g0088 529 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Vra5g0088 529 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Vra5g0088 529 Pfam Armadillo/beta-catenin-like repeat 319 357 IPR000225 GO:0005515
Vra5g0088 529 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Vra5g0088 529 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Vra5g0088 529 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Vra5g0088 529 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Vra5g0088 529 Pfam Armadillo/beta-catenin-like repeat 241 271 IPR000225 GO:0005515
Vra5g0088 529 PIRSF Importin_alpha 2 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vra5g0088 529 SMART arm_5 316 357 IPR000225 GO:0005515
Vra5g0088 529 SMART arm_5 402 442 IPR000225 GO:0005515
Vra5g0088 529 SMART arm_5 359 399 IPR000225 GO:0005515
Vra5g0088 529 SMART arm_5 148 188 IPR000225 GO:0005515
Vra5g0088 529 SMART arm_5 233 272 IPR000225 GO:0005515
Vra5g0088 529 SMART arm_5 189 231 IPR000225 GO:0005515
Vra5g0088 529 SMART arm_5 105 146 IPR000225 GO:0005515
Vra5g0088 529 SMART arm_5 274 314 IPR000225 GO:0005515
Vra5g0088 529 MobiDBLite consensus disorder prediction 505 529 - -
Vra5g0088 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Vra5g0088 529 Gene3D - 11 50 IPR036975 GO:0006606
Vra5g0088 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Vra5g0088 529 SUPERFAMILY ARM repeat 6 500 IPR016024 -
Vra5g0088 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0088 Vra-Chr5 717768 722497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0088 131 391 U-box Gene Family AT3G46510 24.904 3.13e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0088 K15042 - gmx:100808498 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2796 7 48215547 48219801 Vra5g0088 5 717768 722497 PCT