Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0086 ATGAGTGGTGCATCAGAAAACCCTATTCATGACAGTACTGAAGGTAAGGCTTCTTCTTCTTCTTCATCAACAACGTTGAAACTCTTTGGTTTTCCATTAAACCCACCAGGTTACAGAGAGATTCACGTGGTGGCAGCAAGCACCGCCGTTTCTCCTCCTCATTGCCTTTACAAGAGATTCAAGTGCCACTTCTGCTACCGTGAATTCGCCAATTCACAAGCTCTCGGTGGCCACCAAAACGCTCACAAGAGAGAACGCCAGAAAGCTGCTCTCTCACCCTTCGGTTACTTTCGCTACCATCAACGGCTCGTACCACCGAACGGAGGATCAAGGCCGTTGGTTGGTCCACGTGACCGGGCTCAGCGACCGTGGCTCTCGTGGGACACTGATGAGAGAGGTTATCATAGGGTTGGGTTAGTGAGGCCAATGGGTGCAAGTGCAATTAGCATTGGCACAGTGAAGGAAGTACACAATATTATTGATGATGATGATGATGATGATGGTGATGGTGATGGTGATGGTAATGGTGGTGTTGATCTTAGCTTGAGTTTGGCTAACAATACAACTTTCAATTTTAGGGACAAGGAATTTGGCAGGTGTAAGAGAAGTTGA 612 0.4739 MSGASENPIHDSTEGKASSSSSSTTLKLFGFPLNPPGYREIHVVAASTAVSPPHCLYKRFKCHFCYREFANSQALGGHQNAHKRERQKAALSPFGYFRYHQRLVPPNGGSRPLVGPRDRAQRPWLSWDTDERGYHRVGLVRPMGASAISIGTVKEVHNIIDDDDDDDGDGDGDGNGGVDLSLSLANNTTFNFRDKEFGRCKRS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0086 203 MobiDBLite consensus disorder prediction 159 179 - -
Vra5g0086 203 Gene3D Classic Zinc Finger 46 93 - -
Vra5g0086 203 PANTHER ZINC FINGER PROTEIN 8-LIKE 14 186 - -
Vra5g0086 203 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Vra5g0086 203 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Vra5g0086 203 MobiDBLite consensus disorder prediction 1 23 - -
Vra5g0086 203 PANTHER ZINC FINGER PROTEIN 5 14 186 IPR044299 GO:0010090
Vra5g0086 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0086 Vra-Chr5 696581 697192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0086 58 100 C2H2 Transcription Factor Family AT3G58070 65.116 3.01e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0086 - - vun:114162545 294.278